60S ribosomal protein L7a

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

60S ribosomal protein L7a, putative

Species:

Leishmania major

UniProt:

Q4QIP1_LEIMA

TriTrypDb:

LmjF.07.0510 , LMJLV39_070011200 , LMJSD75_070011500

Length:

264

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 2
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	yes	yes: 24

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	yes	yes: 6

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 6

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 1, no: 12
NetGPI	no	yes: 0, no: 13

Cellular components
Term	Name	Level	Count
GO:0005730	nucleolus	5	2
GO:0005737	cytoplasm	2	2
GO:0015934	large ribosomal subunit	4	14
GO:0022625	cytosolic large ribosomal subunit	5	14
GO:0032991	protein-containing complex	1	14
GO:0043226	organelle	2	2
GO:0043228	non-membrane-bounded organelle	3	2
GO:0043229	intracellular organelle	3	2
GO:0043232	intracellular non-membrane-bounded organelle	4	2
GO:0044391	ribosomal subunit	3	14
GO:0110165	cellular anatomical entity	1	3
GO:1990904	ribonucleoprotein complex	2	14
GO:0016020	membrane	2	1

Expansion

Sequence features

Q4QIP1

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4QIP1

Function

Biological processes
Term	Name	Level	Count
GO:0000470	maturation of LSU-rRNA	9	2
GO:0006139	nucleobase-containing compound metabolic process	3	2
GO:0006364	rRNA processing	8	2
GO:0006396	RNA processing	6	2
GO:0006725	cellular aromatic compound metabolic process	3	2
GO:0006807	nitrogen compound metabolic process	2	2
GO:0008152	metabolic process	1	2
GO:0009987	cellular process	1	2
GO:0016070	RNA metabolic process	5	2
GO:0016072	rRNA metabolic process	7	2
GO:0034470	ncRNA processing	7	2
GO:0034641	cellular nitrogen compound metabolic process	3	2
GO:0034660	ncRNA metabolic process	6	2
GO:0043170	macromolecule metabolic process	3	2
GO:0044237	cellular metabolic process	2	2
GO:0044238	primary metabolic process	2	2
GO:0046483	heterocycle metabolic process	3	2
GO:0071704	organic substance metabolic process	2	2
GO:0090304	nucleic acid metabolic process	4	2
GO:1901360	organic cyclic compound metabolic process	3	2

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	14
GO:0003723	RNA binding	4	14
GO:0005488	binding	1	14
GO:0097159	organic cyclic compound binding	2	14
GO:1901363	heterocyclic compound binding	2	14

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	102	104	PF00675	0.513
CLV_NRD_NRD_1	106	108	PF00675	0.517
CLV_NRD_NRD_1	192	194	PF00675	0.381
CLV_NRD_NRD_1	231	233	PF00675	0.462
CLV_NRD_NRD_1	247	249	PF00675	0.488
CLV_NRD_NRD_1	60	62	PF00675	0.476
CLV_NRD_NRD_1	68	70	PF00675	0.468
CLV_PCSK_FUR_1	61	65	PF00082	0.489
CLV_PCSK_KEX2_1	106	108	PF00082	0.579
CLV_PCSK_KEX2_1	231	233	PF00082	0.462
CLV_PCSK_KEX2_1	63	65	PF00082	0.481
CLV_PCSK_KEX2_1	68	70	PF00082	0.472
CLV_PCSK_PC1ET2_1	63	65	PF00082	0.491
CLV_PCSK_PC7_1	64	70	PF00082	0.493
CLV_PCSK_SKI1_1	194	198	PF00082	0.353
CLV_PCSK_SKI1_1	4	8	PF00082	0.670
CLV_PCSK_SKI1_1	63	67	PF00082	0.487
CLV_PCSK_SKI1_1	68	72	PF00082	0.468
CLV_PCSK_SKI1_1	93	97	PF00082	0.468
DEG_APCC_DBOX_1	106	114	PF00400	0.661
DOC_MAPK_gen_1	146	154	PF00069	0.522
DOC_MAPK_gen_1	193	201	PF00069	0.598
DOC_MAPK_gen_1	231	239	PF00069	0.470
DOC_MAPK_gen_1	85	94	PF00069	0.454
DOC_MAPK_HePTP_8	229	241	PF00069	0.466
DOC_MAPK_MEF2A_6	232	241	PF00069	0.470
DOC_PP2B_LxvP_1	165	168	PF13499	0.512
DOC_PP2B_LxvP_1	70	73	PF13499	0.474
DOC_USP7_MATH_1	23	27	PF00917	0.666
DOC_USP7_UBL2_3	118	122	PF12436	0.593
DOC_USP7_UBL2_3	4	8	PF12436	0.649
DOC_USP7_UBL2_3	93	97	PF12436	0.451
DOC_WW_Pin1_4	14	19	PF00397	0.737
LIG_14-3-3_CanoR_1	193	201	PF00244	0.598
LIG_BIR_III_4	189	193	PF00653	0.536
LIG_CaM_IQ_9	134	150	PF13499	0.512
LIG_CSL_BTD_1	165	168	PF09270	0.512
LIG_CtBP_PxDLS_1	160	164	PF00389	0.512
LIG_FHA_1	139	145	PF00498	0.512
LIG_FHA_1	78	84	PF00498	0.453
LIG_LIR_Apic_2	17	22	PF02991	0.729
LIG_SH2_CRK	178	182	PF00017	0.512
LIG_SH2_CRK	19	23	PF00017	0.710
LIG_SH2_SRC	178	181	PF00017	0.512
LIG_SH2_STAP1	43	47	PF00017	0.504
LIG_SH3_3	6	12	PF00018	0.564
LIG_SUMO_SIM_anti_2	159	165	PF11976	0.512
LIG_SUMO_SIM_par_1	129	135	PF11976	0.523
LIG_TYR_ITIM	176	181	PF00017	0.512
MOD_CDC14_SPxK_1	17	20	PF00782	0.728
MOD_CDK_SPxK_1	14	20	PF00069	0.737
MOD_CDK_SPxxK_3	14	21	PF00069	0.690
MOD_CK1_1	240	246	PF00069	0.467
MOD_CK2_1	240	246	PF00069	0.483
MOD_CK2_1	84	90	PF00069	0.455
MOD_Cter_Amidation	191	194	PF01082	0.398
MOD_N-GLC_2	169	171	PF02516	0.398
MOD_NEK2_1	215	220	PF00069	0.442
MOD_NEK2_1	237	242	PF00069	0.484
MOD_PIKK_1	7	13	PF00454	0.750
MOD_PKA_1	7	13	PF00069	0.689
MOD_PKA_2	192	198	PF00069	0.598
MOD_PKA_2	84	90	PF00069	0.461
MOD_Plk_1	208	214	PF00069	0.560
MOD_Plk_1	45	51	PF00069	0.498
MOD_Plk_4	52	58	PF00069	0.470
MOD_ProDKin_1	14	20	PF00069	0.737
MOD_SUMO_rev_2	115	124	PF00179	0.640
MOD_SUMO_rev_2	139	149	PF00179	0.512
TRG_DiLeu_BaEn_1	90	95	PF01217	0.449
TRG_ENDOCYTIC_2	178	181	PF00928	0.512
TRG_ER_diArg_1	230	232	PF00400	0.446
TRG_ER_diArg_1	241	244	PF00400	0.476
TRG_ER_diArg_1	68	70	PF00400	0.477
TRG_NLS_Bipartite_1	231	252	PF00514	0.484
TRG_NLS_MonoCore_2	60	65	PF00514	0.488
TRG_NLS_MonoExtC_3	102	107	PF00514	0.545
TRG_NLS_MonoExtN_4	100	107	PF00514	0.534
TRG_NLS_MonoExtN_4	61	66	PF00514	0.490

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1HQX1	Leptomonas seymouri	94%	100%
A0A0S4IQB8	Bodo saltans	78%	100%
A0A1D8PF11	Candida albicans (strain SC5314 / ATCC MYA-2876)	46%	100%
A0A1X0NEX8	Trypanosomatidae	88%	100%
A0A1X0NPC4	Trypanosomatidae	87%	98%
A0A3S7WPW6	Leishmania donovani	98%	100%
A4H500	Leishmania braziliensis	92%	100%
A4HT77	Leishmania infantum	98%	79%
A4HT78	Leishmania infantum	98%	76%
C9ZUQ0	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	81%	96%
E9AL62	Leishmania mexicana (strain MHOM/GT/2001/U1103)	97%	100%
E9AL63	Leishmania mexicana (strain MHOM/GT/2001/U1103)	97%	88%
O13672	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	44%	100%
O57592	Takifugu rubripes	45%	99%
O76732	Anopheles gambiae	45%	97%
P0DJ14	Tetrahymena thermophila	46%	100%
P0DKK7	Oryza sativa subsp. japonica	45%	100%
P12970	Mus musculus	47%	99%
P17076	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	43%	100%
P29453	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	43%	100%
P32429	Gallus gallus	47%	99%
P35685	Oryza sativa subsp. japonica	45%	100%
P46223	Drosophila melanogaster	49%	97%
P49692	Arabidopsis thaliana	44%	100%
P62424	Homo sapiens	47%	99%
P62425	Rattus norvegicus	47%	99%
Q2TBQ5	Bos taurus	47%	99%
Q4R5C2	Macaca fascicularis	47%	99%
Q54ZD1	Dictyostelium discoideum	46%	93%
Q5ANA1	Candida albicans (strain SC5314 / ATCC MYA-2876)	47%	100%
Q8SSG1	Encephalitozoon cuniculi (strain GB-M1)	39%	100%
Q90YW2	Ictalurus punctatus	45%	99%
Q966C6	Caenorhabditis elegans	43%	100%
Q9LZH9	Arabidopsis thaliana	43%	100%
V5DPU1	Trypanosoma cruzi	84%	86%