Putative 60S ribosomal protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

60S ribosomal protein, putative

Species:

Leishmania major

UniProt:

Q4QFX0_LEIMA

TriTrypDb:

LmjF.14.0150 , LMJLV39_140006500 , LMJSD75_140006500

Length:

181

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 14
NetGPI	no	yes: 0, no: 14

Cellular components
Term	Name	Level	Count
GO:0005840	ribosome	5	15
GO:0032991	protein-containing complex	1	14
GO:0043226	organelle	2	15
GO:0043228	non-membrane-bounded organelle	3	15
GO:0043229	intracellular organelle	3	15
GO:0043232	intracellular non-membrane-bounded organelle	4	15
GO:0110165	cellular anatomical entity	1	15
GO:1990904	ribonucleoprotein complex	2	14

Expansion

Sequence features

Q4QFX0

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4QFX0

Function

Biological processes
Term	Name	Level	Count
GO:0006412	translation	4	15
GO:0006518	peptide metabolic process	4	15
GO:0006807	nitrogen compound metabolic process	2	15
GO:0008152	metabolic process	1	15
GO:0009058	biosynthetic process	2	15
GO:0009059	macromolecule biosynthetic process	4	15
GO:0009987	cellular process	1	15
GO:0019538	protein metabolic process	3	15
GO:0034641	cellular nitrogen compound metabolic process	3	15
GO:0034645	obsolete cellular macromolecule biosynthetic process	4	15
GO:0043043	peptide biosynthetic process	5	15
GO:0043170	macromolecule metabolic process	3	15
GO:0043603	amide metabolic process	3	15
GO:0043604	amide biosynthetic process	4	15
GO:0044237	cellular metabolic process	2	15
GO:0044238	primary metabolic process	2	15
GO:0044249	cellular biosynthetic process	3	15
GO:0044260	obsolete cellular macromolecule metabolic process	3	15
GO:0044271	cellular nitrogen compound biosynthetic process	4	15
GO:0071704	organic substance metabolic process	2	15
GO:1901564	organonitrogen compound metabolic process	3	15
GO:1901566	organonitrogen compound biosynthetic process	4	15
GO:1901576	organic substance biosynthetic process	3	15

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	2
GO:0003723	RNA binding	4	2
GO:0003729	mRNA binding	5	2
GO:0003735	structural constituent of ribosome	2	15
GO:0005198	structural molecule activity	1	15
GO:0005488	binding	1	2
GO:0097159	organic cyclic compound binding	2	2
GO:1901363	heterocyclic compound binding	2	2

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	140	144	PF00656	0.268
CLV_PCSK_SKI1_1	128	132	PF00082	0.274
CLV_PCSK_SKI1_1	134	138	PF00082	0.274
CLV_PCSK_SKI1_1	52	56	PF00082	0.383
CLV_PCSK_SKI1_1	67	71	PF00082	0.463
DOC_MAPK_gen_1	106	118	PF00069	0.447
DOC_MAPK_gen_1	131	141	PF00069	0.237
DOC_MAPK_MEF2A_6	120	129	PF00069	0.260
DOC_MAPK_RevD_3	42	57	PF00069	0.390
DOC_PIKK_1	28	35	PF02985	0.531
DOC_PP1_RVXF_1	50	56	PF00149	0.390
DOC_PP2B_PxIxI_1	122	128	PF00149	0.247
DOC_USP7_UBL2_3	103	107	PF12436	0.490
DOC_USP7_UBL2_3	146	150	PF12436	0.394
DOC_USP7_UBL2_3	173	177	PF12436	0.394
LIG_14-3-3_CanoR_1	13	17	PF00244	0.557
LIG_BRCT_BRCA1_1	60	64	PF00533	0.447
LIG_FHA_1	111	117	PF00498	0.262
LIG_FHA_2	41	47	PF00498	0.363
LIG_LIR_Gen_1	169	178	PF02991	0.159
LIG_LIR_Gen_1	37	47	PF02991	0.372
LIG_LIR_Nem_3	169	174	PF02991	0.202
LIG_LIR_Nem_3	37	42	PF02991	0.419
LIG_PDZ_Class_3	176	181	PF00595	0.236
LIG_SH2_CRK	39	43	PF00017	0.383
LIG_SH2_STAP1	114	118	PF00017	0.295
LIG_SH2_STAP1	65	69	PF00017	0.403
LIG_SH2_STAT5	20	23	PF00017	0.504
MOD_CK1_1	12	18	PF00069	0.652
MOD_CK1_1	40	46	PF00069	0.390
MOD_CK2_1	40	46	PF00069	0.388
MOD_GlcNHglycan	7	10	PF01048	0.533
MOD_GSK3_1	5	12	PF00069	0.549
MOD_N-GLC_1	137	142	PF02516	0.352
MOD_N-GLC_1	157	162	PF02516	0.320
MOD_NEK2_1	154	159	PF00069	0.258
MOD_NEK2_1	5	10	PF00069	0.587
MOD_PIKK_1	37	43	PF00454	0.381
MOD_PKA_2	12	18	PF00069	0.555
MOD_Plk_1	137	143	PF00069	0.352
MOD_Plk_2-3	110	116	PF00069	0.437
MOD_SUMO_for_1	102	105	PF00179	0.551
MOD_SUMO_for_1	116	119	PF00179	0.295
MOD_SUMO_for_1	176	179	PF00179	0.394
MOD_SUMO_rev_2	100	109	PF00179	0.521
MOD_SUMO_rev_2	110	118	PF00179	0.281
MOD_SUMO_rev_2	119	127	PF00179	0.136
MOD_SUMO_rev_2	140	147	PF00179	0.267
TRG_DiLeu_BaLyEn_6	49	54	PF01217	0.402
TRG_ENDOCYTIC_2	171	174	PF00928	0.394
TRG_ENDOCYTIC_2	39	42	PF00928	0.360
TRG_NES_CRM1_1	132	143	PF08389	0.216
TRG_Pf-PMV_PEXEL_1	168	172	PF00026	0.236

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P5Q4	Leptomonas seymouri	81%	100%
A0A0S4IRA5	Bodo saltans	61%	79%
A0A0S4JKH3	Bodo saltans	43%	75%
A0A1X0NNT1	Trypanosomatidae	69%	98%
A0A3S5H6Q7	Leishmania donovani	98%	100%
A0A422NF54	Trypanosoma rangeli	36%	91%
A0A422NX95	Trypanosoma rangeli	65%	92%
A4H7H6	Leishmania braziliensis	86%	100%
A4HVV7	Leishmania infantum	98%	100%
B3EER1	Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)	34%	100%
C9ZMG8	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	40%	85%
C9ZT69	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	66%	99%
E9APK9	Leishmania mexicana (strain MHOM/GT/2001/U1103)	90%	100%
P52815	Homo sapiens	33%	91%
P52827	Cricetus cricetus	35%	89%
Q089R2	Shewanella frigidimarina (strain NCIMB 400)	30%	100%
Q7YR75	Bos taurus	33%	91%
Q9DB15	Mus musculus	33%	90%
V5BHT7	Trypanosoma cruzi	68%	98%