TFIIB_C_1 domain-containing protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

hypothetical protein, conserved

Species:

Leishmania major

UniProt:

Q4QF67_LEIMA

TriTrypDb:

LmjF.15.1170 , LMJLV39_150017900 , LMJSD75_150018000 , LMJSD75_150018100

Length:

428

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 18

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 10
NetGPI	no	yes: 0, no: 10

Cellular components
Term	Name	Level	Count
GO:0000126	transcription factor TFIIIB complex	4	2
GO:0005634	nucleus	5	2
GO:0005667	transcription regulator complex	2	2
GO:0032991	protein-containing complex	1	2
GO:0032993	protein-DNA complex	2	2
GO:0043226	organelle	2	2
GO:0043227	membrane-bounded organelle	3	2
GO:0043229	intracellular organelle	3	2
GO:0043231	intracellular membrane-bounded organelle	4	2
GO:0090576	RNA polymerase III transcription regulator complex	3	2
GO:0097550	transcription preinitiation complex	3	2
GO:0110165	cellular anatomical entity	1	2

Expansion

Sequence features

Q4QF67

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4QF67

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	2
GO:0006351	DNA-templated transcription	7	2
GO:0006352	DNA-templated transcription initiation	6	2
GO:0006383	transcription by RNA polymerase III	8	2
GO:0006725	cellular aromatic compound metabolic process	3	2
GO:0006807	nitrogen compound metabolic process	2	2
GO:0008152	metabolic process	1	2
GO:0009058	biosynthetic process	2	2
GO:0009059	macromolecule biosynthetic process	4	2
GO:0009987	cellular process	1	2
GO:0016070	RNA metabolic process	5	2
GO:0018130	heterocycle biosynthetic process	4	2
GO:0019438	aromatic compound biosynthetic process	4	2
GO:0032774	RNA biosynthetic process	5	2
GO:0034641	cellular nitrogen compound metabolic process	3	2
GO:0034654	nucleobase-containing compound biosynthetic process	4	2
GO:0043170	macromolecule metabolic process	3	2
GO:0044237	cellular metabolic process	2	2
GO:0044238	primary metabolic process	2	2
GO:0044249	cellular biosynthetic process	3	2
GO:0044271	cellular nitrogen compound biosynthetic process	4	2
GO:0046483	heterocycle metabolic process	3	2
GO:0071704	organic substance metabolic process	2	2
GO:0090304	nucleic acid metabolic process	4	2
GO:0097659	nucleic acid-templated transcription	6	2
GO:1901360	organic cyclic compound metabolic process	3	2
GO:1901362	organic cyclic compound biosynthetic process	4	2
GO:1901576	organic substance biosynthetic process	3	2

Molecular functions
Term	Name	Level	Count
GO:0000976	transcription cis-regulatory region binding	5	2
GO:0000987	cis-regulatory region sequence-specific DNA binding	6	2
GO:0000992	RNA polymerase III cis-regulatory region sequence-specific DNA binding	7	2
GO:0000995	RNA polymerase III general transcription initiation factor activity	2	2
GO:0001006	RNA polymerase III type 3 promoter sequence-specific DNA binding	8	2
GO:0001016	RNA polymerase III transcription regulatory region sequence-specific DNA binding	6	2
GO:0001067	transcription regulatory region nucleic acid binding	4	2
GO:0003676	nucleic acid binding	3	2
GO:0003677	DNA binding	4	2
GO:0003690	double-stranded DNA binding	5	2
GO:0005488	binding	1	2
GO:0043565	sequence-specific DNA binding	5	2
GO:0097159	organic cyclic compound binding	2	2
GO:0140223	general transcription initiation factor activity	1	2
GO:1901363	heterocyclic compound binding	2	2
GO:1990837	sequence-specific double-stranded DNA binding	6	2

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	212	216	PF00656	0.357
CLV_NRD_NRD_1	141	143	PF00675	0.398
CLV_NRD_NRD_1	162	164	PF00675	0.305
CLV_NRD_NRD_1	209	211	PF00675	0.280
CLV_NRD_NRD_1	406	408	PF00675	0.765
CLV_PCSK_KEX2_1	141	143	PF00082	0.382
CLV_PCSK_KEX2_1	162	164	PF00082	0.327
CLV_PCSK_KEX2_1	209	211	PF00082	0.280
CLV_PCSK_KEX2_1	408	410	PF00082	0.638
CLV_PCSK_PC1ET2_1	408	410	PF00082	0.638
CLV_PCSK_PC7_1	404	410	PF00082	0.543
CLV_PCSK_SKI1_1	119	123	PF00082	0.485
CLV_PCSK_SKI1_1	314	318	PF00082	0.551
CLV_PCSK_SKI1_1	53	57	PF00082	0.521
DOC_CKS1_1	354	359	PF01111	0.447
DOC_CYCLIN_yCln2_LP_2	187	193	PF00134	0.411
DOC_MAPK_gen_1	162	169	PF00069	0.411
DOC_MAPK_MEF2A_6	128	137	PF00069	0.494
DOC_MAPK_MEF2A_6	282	289	PF00069	0.322
DOC_PP1_RVXF_1	293	299	PF00149	0.495
DOC_PP2B_LxvP_1	242	245	PF13499	0.410
DOC_USP7_MATH_1	104	108	PF00917	0.548
DOC_USP7_MATH_1	127	131	PF00917	0.402
DOC_USP7_MATH_1	17	21	PF00917	0.407
DOC_USP7_MATH_1	176	180	PF00917	0.456
DOC_USP7_MATH_1	269	273	PF00917	0.581
DOC_USP7_MATH_1	306	310	PF00917	0.568
DOC_USP7_MATH_1	339	343	PF00917	0.570
DOC_USP7_MATH_1	370	374	PF00917	0.728
DOC_USP7_MATH_1	386	390	PF00917	0.719
DOC_WW_Pin1_4	353	358	PF00397	0.527
DOC_WW_Pin1_4	413	418	PF00397	0.779
LIG_14-3-3_CanoR_1	128	136	PF00244	0.421
LIG_14-3-3_CanoR_1	411	417	PF00244	0.750
LIG_14-3-3_CanoR_1	78	86	PF00244	0.634
LIG_Actin_WH2_2	189	206	PF00022	0.411
LIG_APCC_ABBA_1	274	279	PF00400	0.450
LIG_BIR_II_1	1	5	PF00653	0.425
LIG_BIR_III_3	1	5	PF00653	0.502
LIG_FHA_1	414	420	PF00498	0.724
LIG_FHA_2	1	7	PF00498	0.413
LIG_FHA_2	200	206	PF00498	0.409
LIG_FHA_2	364	370	PF00498	0.637
LIG_FHA_2	47	53	PF00498	0.576
LIG_FHA_2	54	60	PF00498	0.498
LIG_FHA_2	85	91	PF00498	0.638
LIG_LIR_Gen_1	349	357	PF02991	0.446
LIG_LIR_Gen_1	54	61	PF02991	0.481
LIG_LIR_Nem_3	134	139	PF02991	0.357
LIG_LIR_Nem_3	349	353	PF02991	0.426
LIG_LIR_Nem_3	381	387	PF02991	0.596
LIG_LIR_Nem_3	54	60	PF02991	0.477
LIG_PTAP_UEV_1	396	401	PF05743	0.663
LIG_REV1ctd_RIR_1	134	142	PF16727	0.357
LIG_SH2_CRK	384	388	PF00017	0.602
LIG_SH2_NCK_1	57	61	PF00017	0.505
LIG_SH2_PTP2	238	241	PF00017	0.400
LIG_SH2_SRC	384	387	PF00017	0.626
LIG_SH2_SRC	57	60	PF00017	0.500
LIG_SH2_STAP1	318	322	PF00017	0.357
LIG_SH2_STAT5	14	17	PF00017	0.456
LIG_SH2_STAT5	238	241	PF00017	0.352
LIG_SH2_STAT5	7	10	PF00017	0.499
LIG_SH3_3	296	302	PF00018	0.600
LIG_SH3_3	394	400	PF00018	0.781
LIG_SH3_3	414	420	PF00018	0.650
LIG_TRAF2_1	424	427	PF00917	0.608
LIG_TRAF2_1	87	90	PF00917	0.634
LIG_WRC_WIRS_1	318	323	PF05994	0.361
MOD_CK1_1	107	113	PF00069	0.544
MOD_CK1_1	20	26	PF00069	0.448
MOD_CK1_1	320	326	PF00069	0.477
MOD_CK1_1	395	401	PF00069	0.702
MOD_CK1_1	412	418	PF00069	0.624
MOD_CK1_1	422	428	PF00069	0.804
MOD_CK2_1	363	369	PF00069	0.603
MOD_CK2_1	46	52	PF00069	0.625
MOD_CK2_1	84	90	PF00069	0.647
MOD_DYRK1A_RPxSP_1	413	417	PF00069	0.750
MOD_GlcNHglycan	109	112	PF01048	0.523
MOD_GlcNHglycan	129	132	PF01048	0.406
MOD_GlcNHglycan	307	311	PF01048	0.619
MOD_GlcNHglycan	394	397	PF01048	0.764
MOD_GlcNHglycan	422	425	PF01048	0.713
MOD_GSK3_1	306	313	PF00069	0.568
MOD_GSK3_1	316	323	PF00069	0.490
MOD_GSK3_1	391	398	PF00069	0.755
MOD_GSK3_1	407	414	PF00069	0.731
MOD_NEK2_1	114	119	PF00069	0.525
MOD_NEK2_1	137	142	PF00069	0.411
MOD_NEK2_1	199	204	PF00069	0.376
MOD_NEK2_1	214	219	PF00069	0.407
MOD_NEK2_1	317	322	PF00069	0.536
MOD_PIKK_1	422	428	PF00454	0.613
MOD_PKA_1	407	413	PF00069	0.739
MOD_PKA_2	127	133	PF00069	0.436
MOD_PKA_2	137	143	PF00069	0.426
MOD_PKA_2	412	418	PF00069	0.738
MOD_PKA_2	77	83	PF00069	0.644
MOD_PKB_1	407	415	PF00069	0.696
MOD_Plk_1	339	345	PF00069	0.298
MOD_Plk_1	53	59	PF00069	0.477
MOD_Plk_4	176	182	PF00069	0.383
MOD_Plk_4	34	40	PF00069	0.517
MOD_ProDKin_1	353	359	PF00069	0.523
MOD_ProDKin_1	413	419	PF00069	0.779
MOD_SUMO_for_1	376	379	PF00179	0.656
MOD_SUMO_rev_2	379	383	PF00179	0.669
TRG_DiLeu_BaEn_1	349	354	PF01217	0.510
TRG_DiLeu_BaEn_2	272	278	PF01217	0.467
TRG_DiLeu_BaLyEn_6	237	242	PF01217	0.388
TRG_DiLeu_BaLyEn_6	341	346	PF01217	0.506
TRG_ENDOCYTIC_2	238	241	PF00928	0.454
TRG_ENDOCYTIC_2	318	321	PF00928	0.379
TRG_ENDOCYTIC_2	384	387	PF00928	0.600
TRG_ENDOCYTIC_2	57	60	PF00928	0.500
TRG_ER_diArg_1	161	163	PF00400	0.283
TRG_NLS_MonoExtC_3	406	411	PF00514	0.668
TRG_NLS_MonoExtN_4	404	411	PF00514	0.748
TRG_Pf-PMV_PEXEL_1	258	262	PF00026	0.482

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I166	Leptomonas seymouri	67%	100%
A0A1X0NU06	Trypanosomatidae	37%	100%
A0A3R7MLE9	Trypanosoma rangeli	39%	100%
A0A3S5H6V5	Leishmania donovani	95%	100%
A4H880	Leishmania braziliensis	83%	100%
A4HWK6	Leishmania infantum	95%	100%
C9ZXT3	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	39%	100%
E9AQA7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	94%	100%
V5BK49	Trypanosoma cruzi	38%	100%