DNA-directed RNA polymerase subunit

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

DNA-directed RNA polymerase III subunit C11, putative

Species:

Leishmania major

UniProt:

Q4QDH9_LEIMA

TriTrypDb:

LmjF.19.0420 , LMJLV39_190009400 , LMJSD75_190009300

Length:

151

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0000428	DNA-directed RNA polymerase complex	4	12
GO:0005666	RNA polymerase III complex	4	2
GO:0005730	nucleolus	5	11
GO:0030880	RNA polymerase complex	3	12
GO:0032991	protein-containing complex	1	12
GO:0043226	organelle	2	11
GO:0043228	non-membrane-bounded organelle	3	11
GO:0043229	intracellular organelle	3	11
GO:0043232	intracellular non-membrane-bounded organelle	4	11
GO:0055029	nuclear DNA-directed RNA polymerase complex	3	2
GO:0061695	transferase complex, transferring phosphorus-containing groups	4	12
GO:0110165	cellular anatomical entity	1	11
GO:0140513	nuclear protein-containing complex	2	2
GO:0140535	intracellular protein-containing complex	2	12
GO:1902494	catalytic complex	2	12
GO:1990234	transferase complex	3	12

Expansion

Sequence features

Q4QDH9

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4QDH9

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	12
GO:0006353	DNA-templated transcription termination	6	2
GO:0006354	DNA-templated transcription elongation	6	2
GO:0006355	regulation of DNA-templated transcription	6	2
GO:0006386	termination of RNA polymerase III transcription	7	2
GO:0006725	cellular aromatic compound metabolic process	3	12
GO:0006807	nitrogen compound metabolic process	2	12
GO:0008152	metabolic process	1	12
GO:0009058	biosynthetic process	2	12
GO:0009059	macromolecule biosynthetic process	4	12
GO:0009889	regulation of biosynthetic process	4	2
GO:0009987	cellular process	1	12
GO:0010468	regulation of gene expression	5	2
GO:0010556	regulation of macromolecule biosynthetic process	5	2
GO:0016070	RNA metabolic process	5	12
GO:0018130	heterocycle biosynthetic process	4	12
GO:0019219	regulation of nucleobase-containing compound metabolic process	5	2
GO:0019222	regulation of metabolic process	3	2
GO:0019438	aromatic compound biosynthetic process	4	12
GO:0031323	regulation of cellular metabolic process	4	2
GO:0031326	regulation of cellular biosynthetic process	5	2
GO:0032774	RNA biosynthetic process	5	12
GO:0034641	cellular nitrogen compound metabolic process	3	12
GO:0034654	nucleobase-containing compound biosynthetic process	4	12
GO:0042779	tRNA 3'-trailer cleavage	7	10
GO:0043170	macromolecule metabolic process	3	12
GO:0044237	cellular metabolic process	2	12
GO:0044238	primary metabolic process	2	12
GO:0044249	cellular biosynthetic process	3	12
GO:0044271	cellular nitrogen compound biosynthetic process	4	12
GO:0046483	heterocycle metabolic process	3	12
GO:0050789	regulation of biological process	2	2
GO:0050794	regulation of cellular process	3	2
GO:0051171	regulation of nitrogen compound metabolic process	4	2
GO:0051252	regulation of RNA metabolic process	5	2
GO:0060255	regulation of macromolecule metabolic process	4	2
GO:0065007	biological regulation	1	2
GO:0071704	organic substance metabolic process	2	12
GO:0080090	regulation of primary metabolic process	4	2
GO:0090304	nucleic acid metabolic process	4	12
GO:0090305	nucleic acid phosphodiester bond hydrolysis	5	10
GO:0090501	RNA phosphodiester bond hydrolysis	6	10
GO:1901360	organic cyclic compound metabolic process	3	12
GO:1901362	organic cyclic compound biosynthetic process	4	12
GO:1901576	organic substance biosynthetic process	3	12
GO:1903506	regulation of nucleic acid-templated transcription	7	2
GO:2001141	regulation of RNA biosynthetic process	6	2
GO:0006351	DNA-templated transcription	7	10
GO:0097659	nucleic acid-templated transcription	6	10

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	12
GO:0003677	DNA binding	4	2
GO:0003700	DNA-binding transcription factor activity	2	2
GO:0003824	catalytic activity	1	3
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	6	2
GO:0005488	binding	1	12
GO:0008270	zinc ion binding	6	12
GO:0016740	transferase activity	2	3
GO:0016772	transferase activity, transferring phosphorus-containing groups	3	3
GO:0016779	nucleotidyltransferase activity	4	3
GO:0034062	5'-3' RNA polymerase activity	5	2
GO:0043167	ion binding	2	12
GO:0043169	cation binding	3	12
GO:0046872	metal ion binding	4	12
GO:0046914	transition metal ion binding	5	12
GO:0097159	organic cyclic compound binding	2	12
GO:0097747	RNA polymerase activity	4	2
GO:0140098	catalytic activity, acting on RNA	3	2
GO:0140110	transcription regulator activity	1	2
GO:0140640	catalytic activity, acting on a nucleic acid	2	2
GO:1901363	heterocyclic compound binding	2	12

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_PCSK_SKI1_1	42	46	PF00082	0.587
DEG_Nend_Nbox_1	1	3	PF02207	0.418
DEG_SPOP_SBC_1	75	79	PF00917	0.680
DOC_MAPK_MEF2A_6	120	128	PF00069	0.303
DOC_PP2B_LxvP_1	12	15	PF13499	0.544
DOC_PP4_FxxP_1	2	5	PF00568	0.378
DOC_PP4_FxxP_1	45	48	PF00568	0.530
DOC_USP7_MATH_1	115	119	PF00917	0.313
DOC_USP7_MATH_1	5	9	PF00917	0.490
DOC_USP7_MATH_1	74	78	PF00917	0.708
DOC_USP7_MATH_1	95	99	PF00917	0.653
DOC_WW_Pin1_4	34	39	PF00397	0.562
DOC_WW_Pin1_4	87	92	PF00397	0.535
LIG_14-3-3_CanoR_1	28	34	PF00244	0.462
LIG_APCC_ABBA_1	13	18	PF00400	0.486
LIG_FHA_1	7	13	PF00498	0.390
LIG_FHA_1	88	94	PF00498	0.460
LIG_FHA_2	95	101	PF00498	0.653
LIG_LIR_LC3C_4	9	14	PF02991	0.481
LIG_LIR_Nem_3	136	142	PF02991	0.304
LIG_LIR_Nem_3	86	92	PF02991	0.574
LIG_Pex14_2	2	6	PF04695	0.386
LIG_REV1ctd_RIR_1	136	144	PF16727	0.303
LIG_SH2_SRC	29	32	PF00017	0.482
LIG_SH2_STAT3	122	125	PF00017	0.423
LIG_SH2_STAT5	122	125	PF00017	0.323
LIG_SH2_STAT5	29	32	PF00017	0.389
LIG_SH3_3	35	41	PF00018	0.560
LIG_SUMO_SIM_anti_2	8	15	PF11976	0.403
LIG_TRAF2_2	108	113	PF00917	0.450
MOD_CDK_SPxxK_3	87	94	PF00069	0.538
MOD_CK1_1	32	38	PF00069	0.513
MOD_CK2_1	127	133	PF00069	0.297
MOD_CK2_1	94	100	PF00069	0.656
MOD_GlcNHglycan	129	132	PF01048	0.301
MOD_GlcNHglycan	34	37	PF01048	0.568
MOD_GlcNHglycan	78	81	PF01048	0.675
MOD_GlcNHglycan	96	100	PF01048	0.637
MOD_GSK3_1	48	55	PF00069	0.518
MOD_GSK3_1	83	90	PF00069	0.709
MOD_NEK2_1	6	11	PF00069	0.373
MOD_Plk_4	133	139	PF00069	0.293
MOD_Plk_4	52	58	PF00069	0.496
MOD_Plk_4	6	12	PF00069	0.375
MOD_ProDKin_1	34	40	PF00069	0.557
MOD_ProDKin_1	87	93	PF00069	0.535
MOD_SUMO_for_1	93	96	PF00179	0.660
TRG_DiLeu_BaEn_1	18	23	PF01217	0.329
TRG_Pf-PMV_PEXEL_1	61	65	PF00026	0.693

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I894	Leptomonas seymouri	59%	94%
A0A0S4IUU6	Bodo saltans	41%	100%
A0A1X0P6N2	Trypanosomatidae	43%	100%
A0A3Q8IEF7	Leishmania donovani	97%	100%
A0A422P380	Trypanosoma rangeli	40%	100%
A4HA00	Leishmania braziliensis	76%	93%
A4HY64	Leishmania infantum	97%	100%
D0A0I3	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	42%	100%
E9ARZ4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	93%	100%
O13896	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	29%	100%
Q04307	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	28%	100%
Q07271	Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)	27%	100%
Q2M2S7	Bos taurus	28%	100%
Q56254	Thermococcus celer	26%	100%
Q9CQZ7	Mus musculus	28%	100%
Q9Y2Y1	Homo sapiens	27%	100%
V5C1W2	Trypanosoma cruzi	38%	100%