Putative DNA repair protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

DNA repair protein, putative

Species:

Leishmania major

UniProt:

Q4Q8J3_LEIMA

TriTrypDb:

LmjF.28.0760 , LMJLV39_280013300 , LMJSD75_280013300

Length:

736

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0005634	nucleus	5	2
GO:0043226	organelle	2	2
GO:0043227	membrane-bounded organelle	3	2
GO:0043229	intracellular organelle	3	2
GO:0043231	intracellular membrane-bounded organelle	4	2
GO:0110165	cellular anatomical entity	1	2

Expansion

Sequence features

Q4Q8J3

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4Q8J3

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	2
GO:0006259	DNA metabolic process	4	2
GO:0006281	DNA repair	5	2
GO:0006725	cellular aromatic compound metabolic process	3	2
GO:0006807	nitrogen compound metabolic process	2	2
GO:0006950	response to stress	2	2
GO:0006974	DNA damage response	4	2
GO:0008152	metabolic process	1	2
GO:0009987	cellular process	1	2
GO:0033554	cellular response to stress	3	2
GO:0034641	cellular nitrogen compound metabolic process	3	2
GO:0043170	macromolecule metabolic process	3	2
GO:0044237	cellular metabolic process	2	2
GO:0044238	primary metabolic process	2	2
GO:0044260	obsolete cellular macromolecule metabolic process	3	2
GO:0046483	heterocycle metabolic process	3	2
GO:0050896	response to stimulus	1	2
GO:0051716	cellular response to stimulus	2	2
GO:0071704	organic substance metabolic process	2	2
GO:0090304	nucleic acid metabolic process	4	2
GO:1901360	organic cyclic compound metabolic process	3	2

Molecular functions
Term	Name	Level	Count
GO:0000166	nucleotide binding	3	12
GO:0003824	catalytic activity	1	12
GO:0005488	binding	1	12
GO:0005524	ATP binding	5	12
GO:0008094	ATP-dependent activity, acting on DNA	2	12
GO:0016491	oxidoreductase activity	2	11
GO:0017076	purine nucleotide binding	4	12
GO:0030554	adenyl nucleotide binding	5	12
GO:0032553	ribonucleotide binding	3	12
GO:0032555	purine ribonucleotide binding	4	12
GO:0032559	adenyl ribonucleotide binding	5	12
GO:0035639	purine ribonucleoside triphosphate binding	4	12
GO:0036094	small molecule binding	2	12
GO:0043167	ion binding	2	12
GO:0043168	anion binding	3	12
GO:0043169	cation binding	3	11
GO:0046872	metal ion binding	4	11
GO:0051213	dioxygenase activity	3	11
GO:0097159	organic cyclic compound binding	2	12
GO:0097367	carbohydrate derivative binding	2	12
GO:0140097	catalytic activity, acting on DNA	3	12
GO:0140640	catalytic activity, acting on a nucleic acid	2	12
GO:0140657	ATP-dependent activity	1	12
GO:0140658	ATP-dependent chromatin remodeler activity	3	12
GO:1901265	nucleoside phosphate binding	3	12
GO:1901363	heterocyclic compound binding	2	12

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	455	459	PF00656	0.250
CLV_C14_Caspase3-7	648	652	PF00656	0.383
CLV_C14_Caspase3-7	658	662	PF00656	0.321
CLV_C14_Caspase3-7	696	700	PF00656	0.584
CLV_NRD_NRD_1	148	150	PF00675	0.241
CLV_NRD_NRD_1	185	187	PF00675	0.256
CLV_NRD_NRD_1	238	240	PF00675	0.224
CLV_NRD_NRD_1	338	340	PF00675	0.214
CLV_NRD_NRD_1	62	64	PF00675	0.307
CLV_NRD_NRD_1	644	646	PF00675	0.392
CLV_PCSK_FUR_1	60	64	PF00082	0.165
CLV_PCSK_KEX2_1	138	140	PF00082	0.224
CLV_PCSK_KEX2_1	251	253	PF00082	0.228
CLV_PCSK_KEX2_1	338	340	PF00082	0.217
CLV_PCSK_KEX2_1	62	64	PF00082	0.215
CLV_PCSK_PC1ET2_1	138	140	PF00082	0.224
CLV_PCSK_PC1ET2_1	251	253	PF00082	0.227
CLV_PCSK_SKI1_1	124	128	PF00082	0.240
CLV_PCSK_SKI1_1	138	142	PF00082	0.191
CLV_PCSK_SKI1_1	186	190	PF00082	0.233
CLV_PCSK_SKI1_1	252	256	PF00082	0.244
CLV_PCSK_SKI1_1	349	353	PF00082	0.224
CLV_PCSK_SKI1_1	383	387	PF00082	0.240
CLV_PCSK_SKI1_1	507	511	PF00082	0.442
CLV_PCSK_SKI1_1	575	579	PF00082	0.217
CLV_PCSK_SKI1_1	581	585	PF00082	0.210
CLV_PCSK_SKI1_1	62	66	PF00082	0.256
CLV_PCSK_SKI1_1	655	659	PF00082	0.450
CLV_PCSK_SKI1_1	70	74	PF00082	0.196
DEG_APCC_DBOX_1	506	514	PF00400	0.403
DEG_MDM2_SWIB_1	246	254	PF02201	0.414
DOC_ANK_TNKS_1	453	460	PF00023	0.250
DOC_ANK_TNKS_1	62	69	PF00023	0.415
DOC_CDC14_PxL_1	301	309	PF14671	0.424
DOC_CYCLIN_RxL_1	133	146	PF00134	0.521
DOC_CYCLIN_yClb1_LxF_4	296	302	PF00134	0.424
DOC_MAPK_gen_1	158	166	PF00069	0.424
DOC_MAPK_gen_1	181	190	PF00069	0.419
DOC_MAPK_gen_1	89	99	PF00069	0.386
DOC_MAPK_HePTP_8	578	590	PF00069	0.414
DOC_MAPK_MEF2A_6	183	192	PF00069	0.429
DOC_MAPK_MEF2A_6	36	45	PF00069	0.424
DOC_MAPK_MEF2A_6	581	590	PF00069	0.414
DOC_MAPK_MEF2A_6	92	101	PF00069	0.448
DOC_PP1_RVXF_1	122	129	PF00149	0.414
DOC_PP1_RVXF_1	137	144	PF00149	0.414
DOC_PP1_RVXF_1	522	529	PF00149	0.414
DOC_SPAK_OSR1_1	628	632	PF12202	0.373
DOC_USP7_MATH_1	486	490	PF00917	0.562
DOC_USP7_MATH_1	659	663	PF00917	0.548
DOC_USP7_MATH_1	66	70	PF00917	0.510
DOC_USP7_MATH_1	85	89	PF00917	0.331
DOC_USP7_UBL2_3	183	187	PF12436	0.465
DOC_USP7_UBL2_3	354	358	PF12436	0.488
DOC_WW_Pin1_4	283	288	PF00397	0.439
DOC_WW_Pin1_4	431	436	PF00397	0.298
DOC_WW_Pin1_4	482	487	PF00397	0.603
LIG_14-3-3_CanoR_1	186	191	PF00244	0.511
LIG_14-3-3_CanoR_1	262	272	PF00244	0.414
LIG_14-3-3_CanoR_1	280	288	PF00244	0.414
LIG_14-3-3_CanoR_1	566	576	PF00244	0.419
LIG_14-3-3_CanoR_1	70	75	PF00244	0.433
LIG_14-3-3_CanoR_1	80	84	PF00244	0.405
LIG_Actin_WH2_2	325	340	PF00022	0.414
LIG_Actin_WH2_2	391	408	PF00022	0.519
LIG_AP2alpha_2	600	602	PF02296	0.444
LIG_BIR_II_1	1	5	PF00653	0.377
LIG_BRCT_BRCA1_1	477	481	PF00533	0.417
LIG_BRCT_BRCA1_2	477	483	PF00533	0.373
LIG_FHA_1	1	7	PF00498	0.442
LIG_FHA_1	102	108	PF00498	0.516
LIG_FHA_1	160	166	PF00498	0.414
LIG_FHA_1	187	193	PF00498	0.473
LIG_FHA_1	357	363	PF00498	0.456
LIG_FHA_1	553	559	PF00498	0.426
LIG_FHA_1	625	631	PF00498	0.326
LIG_FHA_2	101	107	PF00498	0.514
LIG_FHA_2	201	207	PF00498	0.421
LIG_FHA_2	211	217	PF00498	0.408
LIG_FHA_2	462	468	PF00498	0.549
LIG_FHA_2	656	662	PF00498	0.490
LIG_FHA_2	709	715	PF00498	0.711
LIG_LIR_Apic_2	600	605	PF02991	0.414
LIG_LIR_Gen_1	151	160	PF02991	0.424
LIG_LIR_Gen_1	206	215	PF02991	0.432
LIG_LIR_Gen_1	372	380	PF02991	0.425
LIG_LIR_Gen_1	393	402	PF02991	0.438
LIG_LIR_Gen_1	474	481	PF02991	0.432
LIG_LIR_Gen_1	529	538	PF02991	0.414
LIG_LIR_Gen_1	720	728	PF02991	0.523
LIG_LIR_LC3C_4	162	165	PF02991	0.438
LIG_LIR_Nem_3	151	155	PF02991	0.424
LIG_LIR_Nem_3	206	211	PF02991	0.432
LIG_LIR_Nem_3	213	218	PF02991	0.430
LIG_LIR_Nem_3	266	272	PF02991	0.414
LIG_LIR_Nem_3	372	378	PF02991	0.414
LIG_LIR_Nem_3	393	399	PF02991	0.438
LIG_LIR_Nem_3	474	480	PF02991	0.465
LIG_LIR_Nem_3	529	534	PF02991	0.419
LIG_LIR_Nem_3	720	724	PF02991	0.599
LIG_NRBOX	294	300	PF00104	0.481
LIG_PDZ_Class_1	731	736	PF00595	0.706
LIG_Pex14_2	128	132	PF04695	0.420
LIG_Pex14_2	246	250	PF04695	0.414
LIG_Pex14_2	477	481	PF04695	0.454
LIG_SH2_CRK	115	119	PF00017	0.465
LIG_SH2_CRK	215	219	PF00017	0.441
LIG_SH2_CRK	375	379	PF00017	0.432
LIG_SH2_NCK_1	545	549	PF00017	0.465
LIG_SH2_SRC	191	194	PF00017	0.462
LIG_SH2_STAP1	55	59	PF00017	0.465
LIG_SH2_STAT3	514	517	PF00017	0.365
LIG_SH2_STAT3	55	58	PF00017	0.465
LIG_SH2_STAT5	191	194	PF00017	0.468
LIG_SH2_STAT5	625	628	PF00017	0.350
LIG_SH2_STAT5	638	641	PF00017	0.281
LIG_SH2_STAT5	680	683	PF00017	0.601
LIG_SH3_3	161	167	PF00018	0.414
LIG_SH3_3	302	308	PF00018	0.434
LIG_SH3_3	350	356	PF00018	0.414
LIG_SH3_3	595	601	PF00018	0.442
LIG_SUMO_SIM_anti_2	162	167	PF11976	0.414
LIG_SUMO_SIM_anti_2	95	104	PF11976	0.365
LIG_SUMO_SIM_par_1	595	600	PF11976	0.414
LIG_TRAF2_1	271	274	PF00917	0.516
LIG_TRAF2_1	606	609	PF00917	0.414
LIG_TRAF2_1	704	707	PF00917	0.530
LIG_UBA3_1	245	251	PF00899	0.516
LIG_UBA3_1	674	679	PF00899	0.603
LIG_WRC_WIRS_1	205	210	PF05994	0.465
LIG_WRC_WIRS_1	531	536	PF05994	0.414
MOD_CK1_1	221	227	PF00069	0.510
MOD_CK1_1	412	418	PF00069	0.618
MOD_CK1_1	430	436	PF00069	0.156
MOD_CK1_1	529	535	PF00069	0.423
MOD_CK1_1	723	729	PF00069	0.566
MOD_CK2_1	173	179	PF00069	0.414
MOD_CK2_1	198	204	PF00069	0.414
MOD_CK2_1	235	241	PF00069	0.522
MOD_CK2_1	365	371	PF00069	0.414
MOD_CK2_1	461	467	PF00069	0.567
MOD_CK2_1	706	712	PF00069	0.774
MOD_GlcNHglycan	220	223	PF01048	0.252
MOD_GlcNHglycan	383	386	PF01048	0.281
MOD_GlcNHglycan	661	664	PF01048	0.480
MOD_GlcNHglycan	687	691	PF01048	0.717
MOD_GlcNHglycan	707	711	PF01048	0.595
MOD_GSK3_1	173	180	PF00069	0.424
MOD_GSK3_1	182	189	PF00069	0.424
MOD_GSK3_1	194	201	PF00069	0.410
MOD_GSK3_1	210	217	PF00069	0.376
MOD_GSK3_1	231	238	PF00069	0.514
MOD_GSK3_1	324	331	PF00069	0.516
MOD_GSK3_1	365	372	PF00069	0.416
MOD_GSK3_1	381	388	PF00069	0.424
MOD_GSK3_1	427	434	PF00069	0.283
MOD_GSK3_1	471	478	PF00069	0.369
MOD_GSK3_1	481	488	PF00069	0.436
MOD_GSK3_1	526	533	PF00069	0.414
MOD_GSK3_1	552	559	PF00069	0.414
MOD_GSK3_1	577	584	PF00069	0.421
MOD_GSK3_1	655	662	PF00069	0.465
MOD_GSK3_1	66	73	PF00069	0.547
MOD_GSK3_1	719	726	PF00069	0.693
MOD_GSK3_1	95	102	PF00069	0.503
MOD_LATS_1	717	723	PF00433	0.506
MOD_N-GLC_1	486	491	PF02516	0.439
MOD_N-GLC_1	588	593	PF02516	0.214
MOD_N-GLC_1	85	90	PF02516	0.224
MOD_NEK2_1	107	112	PF00069	0.501
MOD_NEK2_1	210	215	PF00069	0.438
MOD_NEK2_1	218	223	PF00069	0.453
MOD_NEK2_1	235	240	PF00069	0.530
MOD_NEK2_1	324	329	PF00069	0.516
MOD_NEK2_1	34	39	PF00069	0.424
MOD_NEK2_1	379	384	PF00069	0.403
MOD_NEK2_1	481	486	PF00069	0.499
MOD_NEK2_1	500	505	PF00069	0.179
MOD_NEK2_1	556	561	PF00069	0.434
MOD_NEK2_1	588	593	PF00069	0.443
MOD_NEK2_1	99	104	PF00069	0.532
MOD_PIKK_1	263	269	PF00454	0.414
MOD_PIKK_1	412	418	PF00454	0.592
MOD_PIKK_1	486	492	PF00454	0.536
MOD_PIKK_1	526	532	PF00454	0.516
MOD_PKA_1	186	192	PF00069	0.473
MOD_PKA_2	369	375	PF00069	0.481
MOD_PKA_2	79	85	PF00069	0.438
MOD_Plk_1	19	25	PF00069	0.415
MOD_Plk_1	719	725	PF00069	0.531
MOD_Plk_1	85	91	PF00069	0.438
MOD_Plk_1	95	101	PF00069	0.434
MOD_Plk_2-3	204	210	PF00069	0.516
MOD_Plk_4	374	380	PF00069	0.471
MOD_Plk_4	409	415	PF00069	0.482
MOD_Plk_4	476	482	PF00069	0.416
MOD_Plk_4	530	536	PF00069	0.414
MOD_Plk_4	70	76	PF00069	0.400
MOD_Plk_4	95	101	PF00069	0.472
MOD_ProDKin_1	283	289	PF00069	0.439
MOD_ProDKin_1	431	437	PF00069	0.298
MOD_ProDKin_1	482	488	PF00069	0.595
MOD_SUMO_for_1	357	360	PF00179	0.414
MOD_SUMO_rev_2	142	152	PF00179	0.415
MOD_SUMO_rev_2	176	182	PF00179	0.414
TRG_DiLeu_BaEn_1	159	164	PF01217	0.438
TRG_DiLeu_BaEn_1	67	72	PF01217	0.465
TRG_DiLeu_BaEn_2	205	211	PF01217	0.414
TRG_DiLeu_BaLyEn_6	319	324	PF01217	0.536
TRG_ENDOCYTIC_2	115	118	PF00928	0.465
TRG_ENDOCYTIC_2	215	218	PF00928	0.454
TRG_ENDOCYTIC_2	375	378	PF00928	0.432
TRG_ER_diArg_1	337	339	PF00400	0.414
TRG_ER_diArg_1	59	62	PF00400	0.457
TRG_Pf-PMV_PEXEL_1	252	256	PF00026	0.244
TRG_Pf-PMV_PEXEL_1	511	515	PF00026	0.287
TRG_Pf-PMV_PEXEL_1	63	67	PF00026	0.215

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1IM03	Leptomonas seymouri	79%	100%
A0A0N1PE28	Leptomonas seymouri	23%	73%
A0A0P0WGX7	Oryza sativa subsp. japonica	26%	75%
A0A0S4IWJ2	Bodo saltans	27%	74%
A0A0S4J663	Bodo saltans	24%	66%
A0A0S4JCY2	Bodo saltans	55%	100%
A0A1X0NZ31	Trypanosomatidae	71%	98%
A0A1X0P4C3	Trypanosomatidae	28%	74%
A0A3R7MBR3	Trypanosoma rangeli	28%	75%
A0A3S5H7I9	Leishmania donovani	97%	100%
A0A3S7WYX7	Leishmania donovani	28%	67%
A0A422N365	Trypanosoma rangeli	71%	98%
A4HE09	Leishmania braziliensis	28%	67%
A4HGB7	Leishmania braziliensis	90%	100%
A4I1B6	Leishmania infantum	28%	67%
A4I3F1	Leishmania infantum	97%	100%
B0R061	Danio rerio	23%	76%
D0A5K9	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	29%	75%
D0A7Z6	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	68%	97%
D3Z9Z9	Rattus norvegicus	25%	72%
E1B7X9	Bos taurus	25%	72%
E7F1C4	Danio rerio	24%	77%
E9AXF2	Leishmania mexicana (strain MHOM/GT/2001/U1103)	28%	67%
E9AZN8	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
G5EDG2	Caenorhabditis elegans	26%	74%
O10302	Orgyia pseudotsugata multicapsid polyhedrosis virus	26%	100%
O13762	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	29%	82%
O42861	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	27%	80%
O55764	Invertebrate iridescent virus 6	25%	100%
O60177	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	28%	71%
P31244	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	28%	93%
P34739	Drosophila melanogaster	28%	69%
P41447	Autographa californica nuclear polyhedrosis virus	25%	100%
P54509	Bacillus subtilis (strain 168)	22%	100%
P79051	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	30%	85%
Q04692	Mus musculus	25%	72%
Q09772	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	22%	91%
Q10332	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	29%	89%
Q14527	Homo sapiens	28%	73%
Q4QA20	Leishmania major	28%	67%
Q5ACX1	Candida albicans (strain SC5314 / ATCC MYA-2876)	30%	68%
Q5FWR0	Xenopus tropicalis	27%	73%
Q60848	Mus musculus	27%	90%
Q6C2R8	Yarrowia lipolytica (strain CLIB 122 / E 150)	29%	72%
Q6CJM4	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)	29%	66%
Q6PCN7	Mus musculus	25%	73%
Q6PFE3	Mus musculus	23%	83%
Q753V5	Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)	27%	68%
Q8W103	Arabidopsis thaliana	27%	68%
Q94BR5	Arabidopsis thaliana	26%	75%
Q95216	Oryctolagus cuniculus	27%	73%
Q9DG67	Gallus gallus	23%	80%
Q9FF61	Arabidopsis thaliana	28%	84%
Q9FNI6	Arabidopsis thaliana	30%	72%
Q9H4L7	Homo sapiens	25%	72%
Q9LHE4	Arabidopsis thaliana	27%	70%
Q9NRZ9	Homo sapiens	27%	88%
Q9ZUL5	Arabidopsis thaliana	26%	96%
V5BKT9	Trypanosoma cruzi	70%	100%