KRR1 small subunit processome component

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

hypothetical protein, conserved

Species:

Leishmania major

UniProt:

Q4Q6Y9_LEIMA

TriTrypDb:

LmjF.30.3020 , LMJLV39_300038400 , LMJSD75_300037500

Length:

321

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 10
NetGPI	no	yes: 0, no: 10

Cellular components
Term	Name	Level	Count
GO:0005730	nucleolus	5	11
GO:0005737	cytoplasm	2	2
GO:0030684	preribosome	3	2
GO:0032040	small-subunit processome	4	2
GO:0032991	protein-containing complex	1	11
GO:0043226	organelle	2	11
GO:0043228	non-membrane-bounded organelle	3	11
GO:0043229	intracellular organelle	3	11
GO:0043232	intracellular non-membrane-bounded organelle	4	11
GO:0110165	cellular anatomical entity	1	11
GO:1990904	ribonucleoprotein complex	2	11

Expansion

Sequence features

Q4Q6Y9

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4Q6Y9

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	11
GO:0006364	rRNA processing	8	11
GO:0006396	RNA processing	6	11
GO:0006725	cellular aromatic compound metabolic process	3	11
GO:0006807	nitrogen compound metabolic process	2	11
GO:0008152	metabolic process	1	11
GO:0009987	cellular process	1	11
GO:0016070	RNA metabolic process	5	11
GO:0016072	rRNA metabolic process	7	11
GO:0034470	ncRNA processing	7	11
GO:0034641	cellular nitrogen compound metabolic process	3	11
GO:0034660	ncRNA metabolic process	6	11
GO:0043170	macromolecule metabolic process	3	11
GO:0044237	cellular metabolic process	2	11
GO:0044238	primary metabolic process	2	11
GO:0046483	heterocycle metabolic process	3	11
GO:0071704	organic substance metabolic process	2	11
GO:0090304	nucleic acid metabolic process	4	11
GO:1901360	organic cyclic compound metabolic process	3	11

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	11
GO:0003723	RNA binding	4	11
GO:0005488	binding	1	11
GO:0097159	organic cyclic compound binding	2	11
GO:1901363	heterocyclic compound binding	2	11

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	310	314	PF00656	0.597
CLV_NRD_NRD_1	128	130	PF00675	0.350
CLV_NRD_NRD_1	133	135	PF00675	0.332
CLV_NRD_NRD_1	232	234	PF00675	0.515
CLV_NRD_NRD_1	244	246	PF00675	0.482
CLV_NRD_NRD_1	281	283	PF00675	0.439
CLV_NRD_NRD_1	311	313	PF00675	0.486
CLV_NRD_NRD_1	78	80	PF00675	0.191
CLV_PCSK_FUR_1	278	282	PF00082	0.487
CLV_PCSK_KEX2_1	128	130	PF00082	0.371
CLV_PCSK_KEX2_1	132	134	PF00082	0.366
CLV_PCSK_KEX2_1	198	200	PF00082	0.342
CLV_PCSK_KEX2_1	203	205	PF00082	0.369
CLV_PCSK_KEX2_1	244	246	PF00082	0.584
CLV_PCSK_KEX2_1	261	263	PF00082	0.338
CLV_PCSK_KEX2_1	280	282	PF00082	0.447
CLV_PCSK_KEX2_1	311	313	PF00082	0.552
CLV_PCSK_KEX2_1	78	80	PF00082	0.204
CLV_PCSK_PC1ET2_1	132	134	PF00082	0.336
CLV_PCSK_PC1ET2_1	198	200	PF00082	0.342
CLV_PCSK_PC1ET2_1	203	205	PF00082	0.369
CLV_PCSK_PC1ET2_1	244	246	PF00082	0.584
CLV_PCSK_PC1ET2_1	261	263	PF00082	0.338
CLV_PCSK_PC7_1	128	134	PF00082	0.319
CLV_PCSK_PC7_1	199	205	PF00082	0.350
CLV_PCSK_SKI1_1	129	133	PF00082	0.351
CLV_PCSK_SKI1_1	193	197	PF00082	0.312
CLV_PCSK_SKI1_1	233	237	PF00082	0.481
CLV_PCSK_SKI1_1	252	256	PF00082	0.332
DEG_COP1_1	6	16	PF00400	0.469
DEG_ODPH_VHL_1	275	288	PF01847	0.493
DOC_MAPK_gen_1	278	288	PF00069	0.496
DOC_PP4_FxxP_1	11	14	PF00568	0.468
DOC_PP4_FxxP_1	274	277	PF00568	0.553
DOC_USP7_MATH_1	267	271	PF00917	0.388
DOC_USP7_MATH_1	292	296	PF00917	0.607
DOC_USP7_UBL2_3	226	230	PF12436	0.431
DOC_USP7_UBL2_3	237	241	PF12436	0.424
DOC_USP7_UBL2_3	246	250	PF12436	0.438
DOC_WW_Pin1_4	293	298	PF00397	0.545
LIG_14-3-3_CanoR_1	78	82	PF00244	0.422
LIG_BIR_II_1	1	5	PF00653	0.554
LIG_BRCT_BRCA1_1	8	12	PF00533	0.472
LIG_deltaCOP1_diTrp_1	210	215	PF00928	0.372
LIG_eIF4E_1	190	196	PF01652	0.304
LIG_EVH1_1	255	259	PF00568	0.430
LIG_FHA_1	112	118	PF00498	0.301
LIG_FHA_1	160	166	PF00498	0.281
LIG_FHA_1	170	176	PF00498	0.313
LIG_FHA_2	15	21	PF00498	0.412
LIG_LIR_Apic_2	9	14	PF02991	0.429
LIG_LIR_Gen_1	152	163	PF02991	0.278
LIG_LIR_Gen_1	210	219	PF02991	0.369
LIG_LIR_Gen_1	30	41	PF02991	0.303
LIG_LIR_Gen_1	82	92	PF02991	0.390
LIG_LIR_Nem_3	152	158	PF02991	0.268
LIG_LIR_Nem_3	210	215	PF02991	0.372
LIG_LIR_Nem_3	30	36	PF02991	0.238
LIG_LIR_Nem_3	47	52	PF02991	0.437
LIG_LIR_Nem_3	80	84	PF02991	0.390
LIG_LIR_Nem_3	91	95	PF02991	0.390
LIG_MLH1_MIPbox_1	8	12	PF16413	0.478
LIG_NRBOX	191	197	PF00104	0.303
LIG_Pex14_2	33	37	PF04695	0.390
LIG_SH2_NCK_1	84	88	PF00017	0.485
LIG_SH2_PTP2	155	158	PF00017	0.263
LIG_SH2_SRC	40	43	PF00017	0.384
LIG_SH2_SRC	84	87	PF00017	0.404
LIG_SH2_STAT5	155	158	PF00017	0.263
LIG_SH2_STAT5	40	43	PF00017	0.419
LIG_SH2_STAT5	44	47	PF00017	0.431
LIG_SH3_2	256	261	PF14604	0.421
LIG_SH3_3	162	168	PF00018	0.274
LIG_SH3_3	253	259	PF00018	0.439
LIG_SUMO_SIM_anti_2	162	167	PF11976	0.265
LIG_TRAF2_1	51	54	PF00917	0.485
LIG_UBA3_1	117	123	PF00899	0.307
MOD_CK1_1	290	296	PF00069	0.635
MOD_CK1_1	299	305	PF00069	0.620
MOD_CK2_1	174	180	PF00069	0.440
MOD_CK2_1	199	205	PF00069	0.474
MOD_CK2_1	36	42	PF00069	0.404
MOD_GlcNHglycan	269	272	PF01048	0.399
MOD_GlcNHglycan	289	292	PF01048	0.613
MOD_GlcNHglycan	298	301	PF01048	0.614
MOD_GSK3_1	28	35	PF00069	0.324
MOD_GSK3_1	292	299	PF00069	0.542
MOD_GSK3_1	302	309	PF00069	0.475
MOD_GSK3_1	36	43	PF00069	0.390
MOD_GSK3_1	70	77	PF00069	0.388
MOD_N-GLC_1	118	123	PF02516	0.447
MOD_N-GLC_1	302	307	PF02516	0.472
MOD_NEK2_1	1	6	PF00069	0.491
MOD_NEK2_1	174	179	PF00069	0.435
MOD_NEK2_1	240	245	PF00069	0.401
MOD_NEK2_1	68	73	PF00069	0.427
MOD_NEK2_2	315	320	PF00069	0.462
MOD_PIKK_1	14	20	PF00454	0.369
MOD_PIKK_1	169	175	PF00454	0.449
MOD_PIKK_1	219	225	PF00454	0.543
MOD_PK_1	123	129	PF00069	0.496
MOD_PKA_2	77	83	PF00069	0.422
MOD_Plk_1	118	124	PF00069	0.440
MOD_Plk_1	210	216	PF00069	0.366
MOD_Plk_1	250	256	PF00069	0.440
MOD_Plk_1	28	34	PF00069	0.335
MOD_Plk_4	250	256	PF00069	0.504
MOD_Plk_4	32	38	PF00069	0.398
MOD_Plk_4	40	46	PF00069	0.380
MOD_ProDKin_1	293	299	PF00069	0.547
MOD_SUMO_for_1	197	200	PF00179	0.333
MOD_SUMO_for_1	207	210	PF00179	0.365
MOD_SUMO_for_1	235	238	PF00179	0.424
TRG_DiLeu_BaLyEn_6	133	138	PF01217	0.322
TRG_ENDOCYTIC_2	155	158	PF00928	0.263
TRG_ENDOCYTIC_2	84	87	PF00928	0.419
TRG_ER_diArg_1	127	129	PF00400	0.395
TRG_ER_diArg_1	277	280	PF00400	0.490
TRG_NES_CRM1_1	91	106	PF08389	0.390
TRG_NLS_Bipartite_1	220	237	PF00514	0.445
TRG_NLS_MonoExtC_3	232	237	PF00514	0.450
TRG_NLS_MonoExtN_4	230	237	PF00514	0.451
TRG_NLS_MonoExtN_4	241	248	PF00514	0.458
TRG_Pf-PMV_PEXEL_1	176	180	PF00026	0.311

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1PCB2	Leptomonas seymouri	92%	100%
A0A0S4ITS6	Bodo saltans	76%	94%
A0A1X0P2J2	Trypanosomatidae	81%	100%
A0A3Q8IS78	Leishmania donovani	95%	100%
A0A3R7RRF4	Trypanosoma rangeli	81%	100%
A4HIN5	Leishmania braziliensis	89%	100%
A4I5Y2	Leishmania infantum	96%	100%
B3LU25	Saccharomyces cerevisiae (strain RM11-1a)	51%	100%
B3MM49	Drosophila ananassae	51%	94%
B3N899	Drosophila erecta	51%	93%
B4G9L6	Drosophila persimilis	51%	94%
B4JDU5	Drosophila grimshawi	48%	94%
B4KF66	Drosophila mojavensis	46%	93%
B4LTY6	Drosophila virilis	51%	94%
B4N0P7	Drosophila willistoni	49%	93%
B4P2Y8	Drosophila yakuba	51%	93%
B5VEQ2	Saccharomyces cerevisiae (strain AWRI1631)	51%	100%
C8Z430	Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse)	51%	100%
C9ZRA8	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	80%	100%
E7LRT8	Saccharomyces cerevisiae (strain VIN 13)	51%	100%
E7QBZ1	Saccharomyces cerevisiae (strain Zymaflore VL3)	51%	100%
E9B175	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
O74777	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	53%	98%
P25586	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	51%	100%
Q13601	Homo sapiens	48%	84%
Q3B7L9	Bos taurus	48%	84%
Q54UU6	Dictyostelium discoideum	49%	86%
Q8BGA5	Mus musculus	48%	84%
Q9VPU8	Drosophila melanogaster	46%	93%