Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

methyltransferase, putative

Species:

Leishmania major

UniProt:

MTR1_LEIMA

TriTrypDb:

LmjF.36.6660 , LMJLV39_360081400 , LMJSD75_360081300

Length:

400

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0005634	nucleus	5	12
GO:0005654	nucleoplasm	2	2
GO:0005737	cytoplasm	2	2
GO:0043226	organelle	2	12
GO:0043227	membrane-bounded organelle	3	12
GO:0043229	intracellular organelle	3	12
GO:0043231	intracellular membrane-bounded organelle	4	12
GO:0110165	cellular anatomical entity	1	12

Expansion

Sequence features

Q4Q089

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: Q4Q089

Function

Biological processes
Term	Name	Level	Count
GO:0001510	RNA methylation	4	12
GO:0006139	nucleobase-containing compound metabolic process	3	12
GO:0006370	7-methylguanosine mRNA capping	8	12
GO:0006396	RNA processing	6	12
GO:0006397	mRNA processing	7	12
GO:0006725	cellular aromatic compound metabolic process	3	12
GO:0006807	nitrogen compound metabolic process	2	12
GO:0008152	metabolic process	1	12
GO:0009451	RNA modification	5	12
GO:0009452	7-methylguanosine RNA capping	8	12
GO:0009987	cellular process	1	12
GO:0016070	RNA metabolic process	5	12
GO:0016071	mRNA metabolic process	6	12
GO:0016556	mRNA modification	6	12
GO:0032259	methylation	2	12
GO:0034641	cellular nitrogen compound metabolic process	3	12
GO:0036260	RNA capping	7	12
GO:0036451	cap mRNA methylation	6	12
GO:0043170	macromolecule metabolic process	3	12
GO:0043412	macromolecule modification	4	12
GO:0043414	macromolecule methylation	3	12
GO:0044237	cellular metabolic process	2	12
GO:0044238	primary metabolic process	2	12
GO:0044260	obsolete cellular macromolecule metabolic process	3	12
GO:0046483	heterocycle metabolic process	3	12
GO:0071704	organic substance metabolic process	2	12
GO:0080009	mRNA methylation	5	12
GO:0090304	nucleic acid metabolic process	4	12
GO:0097309	cap1 mRNA methylation	7	12
GO:1901360	organic cyclic compound metabolic process	3	12

Molecular functions
Term	Name	Level	Count
GO:0003824	catalytic activity	1	12
GO:0004483	mRNA (nucleoside-2'-O-)-methyltransferase activity	6	12
GO:0008168	methyltransferase activity	4	12
GO:0008171	O-methyltransferase activity	5	12
GO:0008173	RNA methyltransferase activity	4	12
GO:0008174	mRNA methyltransferase activity	5	12
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	5	12
GO:0016740	transferase activity	2	12
GO:0016741	transferase activity, transferring one-carbon groups	3	12
GO:0140098	catalytic activity, acting on RNA	3	12
GO:0140640	catalytic activity, acting on a nucleic acid	2	12
GO:0003676	nucleic acid binding	3	9
GO:0005488	binding	1	9
GO:0097159	organic cyclic compound binding	2	9
GO:1901363	heterocyclic compound binding	2	9

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	395	399	PF00656	0.644
CLV_NRD_NRD_1	143	145	PF00675	0.386
CLV_NRD_NRD_1	16	18	PF00675	0.527
CLV_NRD_NRD_1	244	246	PF00675	0.347
CLV_NRD_NRD_1	274	276	PF00675	0.325
CLV_PCSK_KEX2_1	118	120	PF00082	0.354
CLV_PCSK_KEX2_1	145	147	PF00082	0.298
CLV_PCSK_KEX2_1	15	17	PF00082	0.516
CLV_PCSK_KEX2_1	274	276	PF00082	0.353
CLV_PCSK_PC1ET2_1	118	120	PF00082	0.354
CLV_PCSK_PC1ET2_1	145	147	PF00082	0.278
CLV_PCSK_SKI1_1	263	267	PF00082	0.259
CLV_PCSK_SKI1_1	31	35	PF00082	0.483
CLV_PCSK_SKI1_1	39	43	PF00082	0.382
DEG_APCC_DBOX_1	49	57	PF00400	0.516
DEG_APCC_DBOX_1	71	79	PF00400	0.464
DEG_Nend_UBRbox_1	1	4	PF02207	0.649
DOC_MAPK_MEF2A_6	202	210	PF00069	0.503
DOC_MAPK_MEF2A_6	291	298	PF00069	0.487
DOC_PP1_RVXF_1	6	13	PF00149	0.447
DOC_USP7_MATH_1	159	163	PF00917	0.584
DOC_USP7_MATH_1	24	28	PF00917	0.511
DOC_USP7_MATH_1	281	285	PF00917	0.476
DOC_USP7_MATH_1	382	386	PF00917	0.775
DOC_USP7_MATH_2	302	308	PF00917	0.492
DOC_USP7_UBL2_3	242	246	PF12436	0.547
DOC_USP7_UBL2_3	375	379	PF12436	0.633
DOC_WW_Pin1_4	170	175	PF00397	0.562
DOC_WW_Pin1_4	256	261	PF00397	0.476
DOC_WW_Pin1_4	387	392	PF00397	0.783
LIG_14-3-3_CanoR_1	113	120	PF00244	0.442
LIG_14-3-3_CanoR_1	285	294	PF00244	0.476
LIG_BIR_III_2	363	367	PF00653	0.522
LIG_BRCT_BRCA1_1	172	176	PF00533	0.503
LIG_BRCT_BRCA1_1	8	12	PF00533	0.545
LIG_Clathr_ClatBox_1	293	297	PF01394	0.562
LIG_deltaCOP1_diTrp_1	304	313	PF00928	0.459
LIG_deltaCOP1_diTrp_1	331	339	PF00928	0.502
LIG_FHA_1	177	183	PF00498	0.482
LIG_FHA_1	350	356	PF00498	0.452
LIG_FHA_1	367	373	PF00498	0.381
LIG_FHA_2	2	8	PF00498	0.562
LIG_FHA_2	56	62	PF00498	0.469
LIG_LIR_Gen_1	102	112	PF02991	0.501
LIG_LIR_Gen_1	122	132	PF02991	0.516
LIG_LIR_Gen_1	165	174	PF02991	0.487
LIG_LIR_Nem_3	102	108	PF02991	0.501
LIG_LIR_Nem_3	122	128	PF02991	0.516
LIG_LIR_Nem_3	165	170	PF02991	0.487
LIG_LIR_Nem_3	256	261	PF02991	0.476
LIG_LIR_Nem_3	297	301	PF02991	0.562
LIG_LIR_Nem_3	303	309	PF02991	0.459
LIG_LIR_Nem_3	311	316	PF02991	0.438
LIG_MYND_1	325	329	PF01753	0.510
LIG_NRBOX	107	113	PF00104	0.581
LIG_Pex14_1	38	42	PF04695	0.413
LIG_Pex14_2	215	219	PF04695	0.487
LIG_Rb_pABgroove_1	249	257	PF01858	0.476
LIG_SH2_CRK	273	277	PF00017	0.487
LIG_SH2_SRC	309	312	PF00017	0.353
LIG_SH2_STAP1	167	171	PF00017	0.524
LIG_SH2_STAT5	267	270	PF00017	0.481
LIG_SH2_STAT5	292	295	PF00017	0.476
LIG_SH2_STAT5	309	312	PF00017	0.366
LIG_SH2_STAT5	68	71	PF00017	0.436
LIG_SH3_3	275	281	PF00018	0.451
LIG_SUMO_SIM_anti_2	58	64	PF11976	0.499
LIG_WRC_WIRS_1	255	260	PF05994	0.487
LIG_WRC_WIRS_1	310	315	PF05994	0.286
MOD_CDK_SPxxK_3	256	263	PF00069	0.476
MOD_CK1_1	259	265	PF00069	0.517
MOD_CK1_1	98	104	PF00069	0.562
MOD_CK2_1	309	315	PF00069	0.476
MOD_Cter_Amidation	142	145	PF01082	0.381
MOD_GlcNHglycan	161	164	PF01048	0.362
MOD_GlcNHglycan	80	83	PF01048	0.517
MOD_GSK3_1	170	177	PF00069	0.505
MOD_GSK3_1	300	307	PF00069	0.528
MOD_GSK3_1	345	352	PF00069	0.430
MOD_GSK3_1	64	71	PF00069	0.526
MOD_GSK3_1	95	102	PF00069	0.536
MOD_N-GLC_1	85	90	PF02516	0.561
MOD_NEK2_1	106	111	PF00069	0.486
MOD_NEK2_1	176	181	PF00069	0.537
MOD_NEK2_1	189	194	PF00069	0.507
MOD_NEK2_1	219	224	PF00069	0.525
MOD_NEK2_1	254	259	PF00069	0.477
MOD_NEK2_1	266	271	PF00069	0.462
MOD_NEK2_1	99	104	PF00069	0.496
MOD_NEK2_2	26	31	PF00069	0.578
MOD_NEK2_2	309	314	PF00069	0.443
MOD_PIKK_1	133	139	PF00454	0.476
MOD_PIKK_1	55	61	PF00454	0.558
MOD_PKA_2	281	287	PF00069	0.487
MOD_Plk_1	217	223	PF00069	0.581
MOD_Plk_1	6	12	PF00069	0.431
MOD_Plk_2-3	6	12	PF00069	0.548
MOD_Plk_4	309	315	PF00069	0.369
MOD_ProDKin_1	170	176	PF00069	0.562
MOD_ProDKin_1	256	262	PF00069	0.476
MOD_ProDKin_1	387	393	PF00069	0.784
MOD_SUMO_rev_2	370	374	PF00179	0.573
TRG_DiLeu_BaEn_1	107	112	PF01217	0.581
TRG_ENDOCYTIC_2	167	170	PF00928	0.476
TRG_ENDOCYTIC_2	273	276	PF00928	0.476
TRG_ER_diArg_1	14	17	PF00400	0.506
TRG_ER_diArg_1	273	275	PF00400	0.525
TRG_NES_CRM1_1	51	66	PF08389	0.490

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P800	Leptomonas seymouri	76%	99%
A0A0S4IIT9	Bodo saltans	50%	98%
A0A1X0NL91	Trypanosomatidae	55%	100%
A0A3S5IS12	Trypanosoma rangeli	53%	100%
A0A3S7XCC2	Leishmania donovani	94%	100%
A4HQI9	Leishmania braziliensis	83%	100%
D0A3N7	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	50%	100%
E9AHZ8	Leishmania infantum	94%	100%
E9AUA2	Leishmania mexicana (strain MHOM/GT/2001/U1103)	94%	100%
Q38AH0	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	50%	100%
Q4E123	Trypanosoma cruzi (strain CL Brener)	54%	100%
Q4Q089	Leishmania major	100%	100%
V5BD10	Trypanosoma cruzi	54%	100%