rRNA maturation RNase YbeY

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

Uncharacterized protein family UPF0054, putative

Species:

Leishmania mexicana

UniProt:

E9B5B9_LEIMU

TriTrypDb:

LmxM.33.3300

Length:

213

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 10
NetGPI	no	yes: 0, no: 10

Cellular components
Term	Name	Level	Count
GO:0005737	cytoplasm	2	1
GO:0005739	mitochondrion	5	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

E9B5B9

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: E9B5B9

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	11
GO:0006364	rRNA processing	8	11
GO:0006396	RNA processing	6	11
GO:0006725	cellular aromatic compound metabolic process	3	11
GO:0006807	nitrogen compound metabolic process	2	11
GO:0008152	metabolic process	1	11
GO:0009987	cellular process	1	11
GO:0016070	RNA metabolic process	5	11
GO:0016072	rRNA metabolic process	7	11
GO:0034470	ncRNA processing	7	11
GO:0034641	cellular nitrogen compound metabolic process	3	11
GO:0034660	ncRNA metabolic process	6	11
GO:0043170	macromolecule metabolic process	3	11
GO:0044237	cellular metabolic process	2	11
GO:0044238	primary metabolic process	2	11
GO:0046483	heterocycle metabolic process	3	11
GO:0071704	organic substance metabolic process	2	11
GO:0090304	nucleic acid metabolic process	4	11
GO:1901360	organic cyclic compound metabolic process	3	11

Molecular functions
Term	Name	Level	Count
GO:0003824	catalytic activity	1	11
GO:0004175	endopeptidase activity	4	11
GO:0004222	metalloendopeptidase activity	5	11
GO:0004518	nuclease activity	4	11
GO:0004519	endonuclease activity	5	11
GO:0005488	binding	1	11
GO:0008233	peptidase activity	3	11
GO:0008237	metallopeptidase activity	4	11
GO:0016787	hydrolase activity	2	11
GO:0016788	hydrolase activity, acting on ester bonds	3	11
GO:0043167	ion binding	2	11
GO:0043169	cation binding	3	11
GO:0046872	metal ion binding	4	11
GO:0140096	catalytic activity, acting on a protein	2	11

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	88	92	PF00656	0.561
CLV_NRD_NRD_1	144	146	PF00675	0.362
CLV_NRD_NRD_1	17	19	PF00675	0.552
CLV_NRD_NRD_1	184	186	PF00675	0.324
CLV_PCSK_FUR_1	142	146	PF00082	0.362
CLV_PCSK_KEX2_1	144	146	PF00082	0.338
CLV_PCSK_KEX2_1	17	19	PF00082	0.552
CLV_PCSK_KEX2_1	184	186	PF00082	0.291
CLV_PCSK_PC7_1	140	146	PF00082	0.386
CLV_PCSK_SKI1_1	2	6	PF00082	0.423
DEG_APCC_DBOX_1	122	130	PF00400	0.482
DEG_APCC_DBOX_1	37	45	PF00400	0.586
DEG_Nend_UBRbox_1	1	4	PF02207	0.503
DOC_CDC14_PxL_1	151	159	PF14671	0.562
DOC_MAPK_gen_1	17	28	PF00069	0.474
DOC_MAPK_MEF2A_6	202	209	PF00069	0.592
DOC_MAPK_MEF2A_6	21	30	PF00069	0.438
DOC_MAPK_NFAT4_5	21	29	PF00069	0.480
DOC_MAPK_RevD_3	132	145	PF00069	0.586
DOC_WW_Pin1_4	10	15	PF00397	0.441
DOC_WW_Pin1_4	100	105	PF00397	0.591
DOC_WW_Pin1_4	172	177	PF00397	0.412
DOC_WW_Pin1_4	66	71	PF00397	0.506
LIG_14-3-3_CanoR_1	145	155	PF00244	0.567
LIG_14-3-3_CanoR_1	61	68	PF00244	0.439
LIG_Clathr_ClatBox_1	27	31	PF01394	0.562
LIG_EH1_1	21	29	PF00400	0.447
LIG_eIF4E_1	156	162	PF01652	0.534
LIG_eIF4E_1	22	28	PF01652	0.449
LIG_FHA_1	11	17	PF00498	0.471
LIG_FHA_1	116	122	PF00498	0.588
LIG_FHA_1	148	154	PF00498	0.565
LIG_FHA_1	18	24	PF00498	0.379
LIG_FHA_1	61	67	PF00498	0.482
LIG_Integrin_RGD_1	89	91	PF01839	0.330
LIG_LIR_Gen_1	135	146	PF02991	0.514
LIG_LIR_Gen_1	42	49	PF02991	0.558
LIG_LIR_Gen_1	80	87	PF02991	0.492
LIG_LIR_Nem_3	135	141	PF02991	0.485
LIG_LIR_Nem_3	3	7	PF02991	0.501
LIG_LIR_Nem_3	42	46	PF02991	0.558
LIG_LIR_Nem_3	67	71	PF02991	0.555
LIG_LIR_Nem_3	80	86	PF02991	0.563
LIG_NRBOX	22	28	PF00104	0.433
LIG_SH2_CRK	138	142	PF00017	0.586
LIG_SH2_SRC	156	159	PF00017	0.534
LIG_SH2_STAP1	35	39	PF00017	0.562
LIG_SH2_STAT5	156	159	PF00017	0.474
LIG_SH2_STAT5	22	25	PF00017	0.429
LIG_SH3_3	149	155	PF00018	0.534
LIG_SUMO_SIM_par_1	26	31	PF11976	0.562
LIG_TYR_ITIM	136	141	PF00017	0.480
LIG_WRC_WIRS_1	1	6	PF05994	0.592
LIG_WRC_WIRS_1	65	70	PF05994	0.444
MOD_CDK_SPxxK_3	10	17	PF00069	0.469
MOD_CDK_SPxxK_3	66	73	PF00069	0.320
MOD_GSK3_1	56	63	PF00069	0.348
MOD_GSK3_1	96	103	PF00069	0.402
MOD_NEK2_1	117	122	PF00069	0.471
MOD_NEK2_1	7	12	PF00069	0.486
MOD_PIKK_1	115	121	PF00454	0.448
MOD_PKA_1	17	23	PF00069	0.262
MOD_PKA_2	17	23	PF00069	0.319
MOD_PKA_2	60	66	PF00069	0.402
MOD_Plk_4	117	123	PF00069	0.430
MOD_Plk_4	73	79	PF00069	0.457
MOD_ProDKin_1	10	16	PF00069	0.434
MOD_ProDKin_1	100	106	PF00069	0.488
MOD_ProDKin_1	172	178	PF00069	0.237
MOD_ProDKin_1	66	72	PF00069	0.368
TRG_DiLeu_BaEn_1	19	24	PF01217	0.324
TRG_ENDOCYTIC_2	138	141	PF00928	0.400
TRG_ER_diArg_1	139	142	PF00400	0.417
TRG_ER_diArg_1	144	146	PF00400	0.397
TRG_ER_diArg_1	16	18	PF00400	0.552
TRG_ER_diArg_1	183	185	PF00400	0.345

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I1C3	Leptomonas seymouri	51%	99%
A0A0S4ILL3	Bodo saltans	38%	89%
A0A1X0PA77	Trypanosomatidae	36%	98%
A0A3R7KIB7	Trypanosoma rangeli	39%	100%
A0A3S7X8C1	Leishmania donovani	88%	100%
A4HB49	Leishmania braziliensis	79%	100%
A4IA97	Leishmania infantum	90%	100%
C9ZLZ7	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	35%	100%
Q4Q2L4	Leishmania major	88%	100%