CAF1C_H4-bd domain-containing protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

ribosome assembly protein RRB1, putative

Species:

Leishmania mexicana

UniProt:

E9B428_LEIMU

TriTrypDb:

LmxM.32.1910

Length:

584

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0005730	nucleolus	5	1
GO:0043226	organelle	2	1
GO:0043228	non-membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043232	intracellular non-membrane-bounded organelle	4	1
GO:0110165	cellular anatomical entity	1	2
GO:0016020	membrane	2	1

Expansion

Sequence features

E9B428

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: E9B428

Function

Biological processes
Term	Name	Level	Count
GO:0009987	cellular process	1	1
GO:0022613	ribonucleoprotein complex biogenesis	4	1
GO:0042254	ribosome biogenesis	5	1
GO:0044085	cellular component biogenesis	3	1
GO:0071840	cellular component organization or biogenesis	2	1

Could not find GO molecular_function term for this entry.

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	175	179	PF00656	0.511
CLV_C14_Caspase3-7	220	224	PF00656	0.537
CLV_C14_Caspase3-7	246	250	PF00656	0.588
CLV_C14_Caspase3-7	8	12	PF00656	0.626
CLV_NRD_NRD_1	28	30	PF00675	0.520
CLV_NRD_NRD_1	34	36	PF00675	0.553
CLV_NRD_NRD_1	467	469	PF00675	0.379
CLV_PCSK_KEX2_1	2	4	PF00082	0.576
CLV_PCSK_KEX2_1	34	36	PF00082	0.587
CLV_PCSK_KEX2_1	467	469	PF00082	0.500
CLV_PCSK_KEX2_1	6	8	PF00082	0.559
CLV_PCSK_PC1ET2_1	2	4	PF00082	0.575
CLV_PCSK_PC1ET2_1	6	8	PF00082	0.567
CLV_PCSK_SKI1_1	257	261	PF00082	0.427
CLV_PCSK_SKI1_1	3	7	PF00082	0.590
CLV_PCSK_SKI1_1	302	306	PF00082	0.409
CLV_PCSK_SKI1_1	37	41	PF00082	0.677
CLV_PCSK_SKI1_1	427	431	PF00082	0.240
CLV_PCSK_SKI1_1	468	472	PF00082	0.495
CLV_PCSK_SKI1_1	477	481	PF00082	0.398
CLV_PCSK_SKI1_1	483	487	PF00082	0.314
CLV_PCSK_SKI1_1	98	102	PF00082	0.468
DEG_APCC_DBOX_1	181	189	PF00400	0.540
DEG_APCC_DBOX_1	199	207	PF00400	0.508
DEG_APCC_DBOX_1	505	513	PF00400	0.421
DEG_Nend_UBRbox_1	1	4	PF02207	0.587
DEG_SPOP_SBC_1	382	386	PF00917	0.394
DOC_CKS1_1	335	340	PF01111	0.373
DOC_CKS1_1	469	474	PF01111	0.429
DOC_CYCLIN_yClb1_LxF_4	145	150	PF00134	0.579
DOC_MAPK_gen_1	328	335	PF00069	0.406
DOC_MAPK_gen_1	421	430	PF00069	0.483
DOC_MAPK_gen_1	444	453	PF00069	0.344
DOC_MAPK_gen_1	482	490	PF00069	0.402
DOC_MAPK_MEF2A_6	162	170	PF00069	0.409
DOC_MAPK_MEF2A_6	200	208	PF00069	0.500
DOC_PP1_RVXF_1	145	151	PF00149	0.365
DOC_PP1_RVXF_1	425	431	PF00149	0.353
DOC_PP1_RVXF_1	99	106	PF00149	0.523
DOC_PP4_FxxP_1	335	338	PF00568	0.355
DOC_USP7_MATH_1	123	127	PF00917	0.593
DOC_USP7_MATH_1	277	281	PF00917	0.521
DOC_USP7_MATH_1	338	342	PF00917	0.388
DOC_USP7_MATH_1	382	386	PF00917	0.353
DOC_USP7_MATH_1	432	436	PF00917	0.387
DOC_USP7_MATH_1	484	488	PF00917	0.437
DOC_USP7_MATH_1	5	9	PF00917	0.687
DOC_USP7_UBL2_3	2	6	PF12436	0.613
DOC_WW_Pin1_4	334	339	PF00397	0.366
DOC_WW_Pin1_4	349	354	PF00397	0.276
DOC_WW_Pin1_4	396	401	PF00397	0.320
DOC_WW_Pin1_4	468	473	PF00397	0.486
LIG_14-3-3_CanoR_1	182	190	PF00244	0.391
LIG_14-3-3_CanoR_1	302	310	PF00244	0.469
LIG_14-3-3_CanoR_1	37	44	PF00244	0.449
LIG_14-3-3_CanoR_1	378	387	PF00244	0.375
LIG_14-3-3_CanoR_1	446	453	PF00244	0.360
LIG_14-3-3_CanoR_1	506	510	PF00244	0.400
LIG_APCC_ABBA_1	490	495	PF00400	0.338
LIG_BRCT_BRCA1_1	101	105	PF00533	0.675
LIG_BRCT_BRCA1_1	486	490	PF00533	0.292
LIG_CaM_NSCaTE_8	128	135	PF13499	0.539
LIG_eIF4E_1	568	574	PF01652	0.296
LIG_FHA_1	185	191	PF00498	0.513
LIG_FHA_2	109	115	PF00498	0.483
LIG_FHA_2	191	197	PF00498	0.513
LIG_FHA_2	212	218	PF00498	0.405
LIG_FHA_2	399	405	PF00498	0.353
LIG_FHA_2	452	458	PF00498	0.295
LIG_FHA_2	484	490	PF00498	0.292
LIG_FHA_2	506	512	PF00498	0.306
LIG_FHA_2	564	570	PF00498	0.441
LIG_Integrin_RGD_1	129	131	PF01839	0.597
LIG_LIR_Gen_1	169	175	PF02991	0.412
LIG_LIR_Gen_1	82	91	PF02991	0.493
LIG_LIR_Nem_3	156	161	PF02991	0.409
LIG_LIR_Nem_3	163	168	PF02991	0.409
LIG_LIR_Nem_3	169	173	PF02991	0.409
LIG_LIR_Nem_3	350	354	PF02991	0.323
LIG_LIR_Nem_3	565	571	PF02991	0.296
LIG_LIR_Nem_3	82	88	PF02991	0.470
LIG_LYPXL_yS_3	165	168	PF13949	0.409
LIG_PCNA_PIPBox_1	522	531	PF02747	0.537
LIG_PCNA_yPIPBox_3	494	506	PF02747	0.423
LIG_PCNA_yPIPBox_3	516	529	PF02747	0.522
LIG_PTB_Apo_2	149	156	PF02174	0.409
LIG_PTB_Phospho_1	149	155	PF10480	0.409
LIG_REV1ctd_RIR_1	156	165	PF16727	0.409
LIG_SH2_NCK_1	216	220	PF00017	0.630
LIG_SH2_STAP1	155	159	PF00017	0.423
LIG_SH2_STAT3	536	539	PF00017	0.492
LIG_SH2_STAT5	207	210	PF00017	0.430
LIG_SH2_STAT5	228	231	PF00017	0.570
LIG_SH2_STAT5	63	66	PF00017	0.460
LIG_SH3_3	367	373	PF00018	0.303
LIG_SUMO_SIM_anti_2	202	207	PF11976	0.483
LIG_SUMO_SIM_anti_2	495	504	PF11976	0.391
LIG_SUMO_SIM_par_1	280	288	PF11976	0.329
LIG_SUMO_SIM_par_1	413	420	PF11976	0.285
LIG_SUMO_SIM_par_1	495	504	PF11976	0.312
LIG_TRAF2_1	392	395	PF00917	0.313
LIG_UBA3_1	573	580	PF00899	0.451
MOD_CK1_1	308	314	PF00069	0.511
MOD_CK1_1	341	347	PF00069	0.373
MOD_CK1_1	381	387	PF00069	0.405
MOD_CK1_1	496	502	PF00069	0.330
MOD_CK2_1	101	107	PF00069	0.700
MOD_CK2_1	108	114	PF00069	0.686
MOD_CK2_1	389	395	PF00069	0.340
MOD_CK2_1	451	457	PF00069	0.437
MOD_CK2_1	483	489	PF00069	0.301
MOD_CK2_1	56	62	PF00069	0.546
MOD_CK2_1	563	569	PF00069	0.440
MOD_GlcNHglycan	277	280	PF01048	0.501
MOD_GlcNHglycan	321	324	PF01048	0.499
MOD_GlcNHglycan	360	363	PF01048	0.266
MOD_GlcNHglycan	380	383	PF01048	0.244
MOD_GlcNHglycan	457	460	PF01048	0.310
MOD_GlcNHglycan	529	532	PF01048	0.538
MOD_GlcNHglycan	91	95	PF01048	0.600
MOD_GSK3_1	15	22	PF00069	0.723
MOD_GSK3_1	217	224	PF00069	0.510
MOD_GSK3_1	334	341	PF00069	0.373
MOD_GSK3_1	354	361	PF00069	0.180
MOD_GSK3_1	378	385	PF00069	0.361
MOD_GSK3_1	451	458	PF00069	0.297
MOD_LATS_1	481	487	PF00433	0.408
MOD_N-GLC_1	178	183	PF02516	0.220
MOD_N-GLC_1	221	226	PF02516	0.672
MOD_N-GLC_1	308	313	PF02516	0.458
MOD_N-GLC_1	493	498	PF02516	0.333
MOD_N-GLC_2	210	212	PF02516	0.209
MOD_NEK2_1	148	153	PF00069	0.409
MOD_NEK2_1	206	211	PF00069	0.420
MOD_NEK2_1	451	456	PF00069	0.289
MOD_NEK2_2	364	369	PF00069	0.362
MOD_PIKK_1	190	196	PF00454	0.409
MOD_PIKK_1	277	283	PF00454	0.503
MOD_PIKK_1	398	404	PF00454	0.366
MOD_PKA_1	6	12	PF00069	0.665
MOD_PKA_2	505	511	PF00069	0.406
MOD_PKA_2	6	12	PF00069	0.667
MOD_PKB_1	35	43	PF00069	0.443
MOD_PKB_1	444	452	PF00069	0.394
MOD_Plk_1	178	184	PF00069	0.391
MOD_Plk_1	493	499	PF00069	0.346
MOD_Plk_1	50	56	PF00069	0.630
MOD_Plk_1	510	516	PF00069	0.257
MOD_Plk_2-3	217	223	PF00069	0.507
MOD_Plk_2-3	232	238	PF00069	0.563
MOD_Plk_2-3	50	56	PF00069	0.584
MOD_Plk_4	123	129	PF00069	0.521
MOD_Plk_4	184	190	PF00069	0.412
MOD_Plk_4	354	360	PF00069	0.349
MOD_Plk_4	364	370	PF00069	0.290
MOD_Plk_4	493	499	PF00069	0.315
MOD_Plk_4	505	511	PF00069	0.279
MOD_Plk_4	578	584	PF00069	0.483
MOD_ProDKin_1	334	340	PF00069	0.372
MOD_ProDKin_1	349	355	PF00069	0.279
MOD_ProDKin_1	396	402	PF00069	0.327
MOD_ProDKin_1	468	474	PF00069	0.478
MOD_SUMO_for_1	146	149	PF00179	0.549
TRG_ENDOCYTIC_2	155	158	PF00928	0.409
TRG_ENDOCYTIC_2	165	168	PF00928	0.409
TRG_ENDOCYTIC_2	568	571	PF00928	0.333
TRG_ENDOCYTIC_2	85	88	PF00928	0.454
TRG_ER_diArg_1	34	37	PF00400	0.634
TRG_ER_diArg_1	466	468	PF00400	0.502
TRG_Pf-PMV_PEXEL_1	302	306	PF00026	0.479
TRG_Pf-PMV_PEXEL_1	37	41	PF00026	0.678

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P833	Leptomonas seymouri	82%	100%
A0A0N0P8W9	Leptomonas seymouri	23%	87%
A0A0S4IIU6	Bodo saltans	63%	97%
A0A1X0P3N3	Trypanosomatidae	63%	100%
A0A3S7X390	Leishmania donovani	23%	90%
A0A3S7X6T4	Leishmania donovani	95%	100%
A0A422N600	Trypanosoma rangeli	61%	100%
A4HLQ3	Leishmania braziliensis	88%	100%
A4I5C6	Leishmania infantum	23%	90%
A4I953	Leishmania infantum	95%	100%
D0A6C1	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	56%	100%
E9B0M4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	23%	90%
O22466	Solanum lycopersicum	23%	100%
O22468	Arabidopsis thaliana	23%	100%
O22469	Arabidopsis thaliana	23%	100%
P0CS36	Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)	22%	100%
P0CS37	Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)	22%	100%
P90916	Caenorhabditis elegans	25%	100%
Q04225	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	29%	100%
Q1JQD2	Bos taurus	31%	100%
Q2UA71	Aspergillus oryzae (strain ATCC 42149 / RIB 40)	24%	100%
Q4P553	Ustilago maydis (strain 521 / FGSC 9021)	25%	100%
Q4Q3Z6	Leishmania major	94%	100%
Q4Q7K8	Leishmania major	23%	90%
Q4WEI5	Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)	24%	100%
Q54ED4	Dictyostelium discoideum	33%	100%
Q54SD4	Dictyostelium discoideum	25%	100%
Q5XI13	Rattus norvegicus	32%	100%
Q61Y48	Caenorhabditis briggsae	22%	100%
Q7S7N3	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)	22%	100%
Q810D6	Mus musculus	32%	100%
Q9BQ67	Homo sapiens	33%	100%
Q9I8G9	Gallus gallus	23%	100%
Q9P783	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	32%	100%
Q9SU78	Arabidopsis thaliana	22%	100%
Q9ZUN8	Arabidopsis thaliana	33%	100%
V5BPB2	Trypanosoma cruzi	56%	94%