LeishMANIAdb
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Plastid-encoded RNA polymerase subunit alpha

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:
Plastid-encoded RNA polymerase subunit alpha
Gene product:
DNA-directed RNA polymerase II subunit 3, putative
Species:
Leishmania mexicana
UniProt:
E9AM65_LEIMU
TriTrypDb:
LmxM.08_29.0140
Length:
337

Localization

Secreted promastigote
Source Evidence on protein Close homologs
Cuervo et al. no yes: 0
Hassani et al. no yes: 0
Forrest at al. (metacyclic) no yes: 0
Forrest at al. (procyclic) no yes: 0
Silverman et al. no yes: 0
Pissara et al. no yes: 0
Secreted amastigote
Source Evidence on protein Close homologs
Pires et al. no yes: 0
Exosome
Source Evidence on protein Close homologs
Silverman et al. no yes: 0
Glycosome
Source Evidence on protein Close homologs
Jamdhade et al. no yes: 0
Predictions
Source Evidence on protein Close homologs
DeepLoc
SignalP6 no yes: 0, no: 11
NetGPI no yes: 0, no: 11
Cellular components
Term Name Level Count
GO:0000428 DNA-directed RNA polymerase complex 4 12
GO:0030880 RNA polymerase complex 3 12
GO:0032991 protein-containing complex 1 12
GO:0061695 transferase complex, transferring phosphorus-containing groups 4 12
GO:0140535 intracellular protein-containing complex 2 12
GO:1902494 catalytic complex 2 12
GO:1990234 transferase complex 3 12
GO:0005665 RNA polymerase II, core complex 4 1
GO:0055029 nuclear DNA-directed RNA polymerase complex 3 1
GO:0140513 nuclear protein-containing complex 2 1

Expansion

Sequence features

E9AM65
Sequence
MSA
Disorder
Secondary
Topology
Domains
SignalP
GPI
Phosphorylations
ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: E9AM65

Function

Biological processes
Term Name Level Count
GO:0006139 nucleobase-containing compound metabolic process 3 12
GO:0006351 DNA-templated transcription 7 12
GO:0006725 cellular aromatic compound metabolic process 3 12
GO:0006807 nitrogen compound metabolic process 2 12
GO:0008152 metabolic process 1 12
GO:0009058 biosynthetic process 2 12
GO:0009059 macromolecule biosynthetic process 4 12
GO:0009987 cellular process 1 12
GO:0016070 RNA metabolic process 5 12
GO:0018130 heterocycle biosynthetic process 4 12
GO:0019438 aromatic compound biosynthetic process 4 12
GO:0032774 RNA biosynthetic process 5 12
GO:0034641 cellular nitrogen compound metabolic process 3 12
GO:0034654 nucleobase-containing compound biosynthetic process 4 12
GO:0043170 macromolecule metabolic process 3 12
GO:0044237 cellular metabolic process 2 12
GO:0044238 primary metabolic process 2 12
GO:0044249 cellular biosynthetic process 3 12
GO:0044271 cellular nitrogen compound biosynthetic process 4 12
GO:0046483 heterocycle metabolic process 3 12
GO:0071704 organic substance metabolic process 2 12
GO:0090304 nucleic acid metabolic process 4 12
GO:0097659 nucleic acid-templated transcription 6 12
GO:1901360 organic cyclic compound metabolic process 3 12
GO:1901362 organic cyclic compound biosynthetic process 4 12
GO:1901576 organic substance biosynthetic process 3 12
Molecular functions
Term Name Level Count
GO:0003676 nucleic acid binding 3 6
GO:0003677 DNA binding 4 6
GO:0003824 catalytic activity 1 12
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 6 12
GO:0005488 binding 1 12
GO:0005515 protein binding 2 12
GO:0016740 transferase activity 2 12
GO:0016772 transferase activity, transferring phosphorus-containing groups 3 12
GO:0016779 nucleotidyltransferase activity 4 12
GO:0034062 5'-3' RNA polymerase activity 5 12
GO:0046983 protein dimerization activity 3 12
GO:0097159 organic cyclic compound binding 2 6
GO:0097747 RNA polymerase activity 4 12
GO:0140098 catalytic activity, acting on RNA 3 12
GO:0140640 catalytic activity, acting on a nucleic acid 2 12
GO:1901363 heterocyclic compound binding 2 6

Putative motif mimicry

Leishmania From To Domain/Motif Score
CLV_NRD_NRD_1 156 158 PF00675 0.209
CLV_NRD_NRD_1 283 285 PF00675 0.219
CLV_NRD_NRD_1 323 325 PF00675 0.678
CLV_NRD_NRD_1 35 37 PF00675 0.218
CLV_PCSK_KEX2_1 35 37 PF00082 0.218
CLV_PCSK_KEX2_1 79 81 PF00082 0.231
CLV_PCSK_PC1ET2_1 79 81 PF00082 0.311
CLV_PCSK_SKI1_1 114 118 PF00082 0.253
CLV_PCSK_SKI1_1 205 209 PF00082 0.218
CLV_PCSK_SKI1_1 36 40 PF00082 0.209
DEG_APCC_DBOX_1 283 291 PF00400 0.418
DEG_APCC_DBOX_1 35 43 PF00400 0.407
DEG_APCC_DBOX_1 66 74 PF00400 0.407
DEG_Nend_UBRbox_1 1 4 PF02207 0.360
DOC_CDC14_PxL_1 39 47 PF14671 0.407
DOC_CYCLIN_RxL_1 76 86 PF00134 0.511
DOC_CYCLIN_yCln2_LP_2 241 247 PF00134 0.431
DOC_MAPK_HePTP_8 173 185 PF00069 0.336
DOC_MAPK_MEF2A_6 146 154 PF00069 0.430
DOC_MAPK_MEF2A_6 176 185 PF00069 0.458
DOC_MAPK_MEF2A_6 240 248 PF00069 0.449
DOC_MAPK_RevD_3 270 286 PF00069 0.418
DOC_PP1_RVXF_1 77 84 PF00149 0.511
DOC_USP7_UBL2_3 158 162 PF12436 0.407
LIG_14-3-3_CanoR_1 289 295 PF00244 0.454
LIG_14-3-3_CanoR_1 53 59 PF00244 0.511
LIG_Actin_WH2_2 19 37 PF00022 0.257
LIG_FHA_1 18 24 PF00498 0.316
LIG_FHA_1 212 218 PF00498 0.435
LIG_FHA_1 259 265 PF00498 0.418
LIG_FHA_1 311 317 PF00498 0.490
LIG_FHA_1 42 48 PF00498 0.465
LIG_FHA_1 54 60 PF00498 0.418
LIG_FHA_1 98 104 PF00498 0.438
LIG_FHA_2 230 236 PF00498 0.511
LIG_LIR_Gen_1 235 246 PF02991 0.431
LIG_LIR_Nem_3 235 241 PF02991 0.431
LIG_LIR_Nem_3 48 52 PF02991 0.458
LIG_Pex14_2 258 262 PF04695 0.511
LIG_SH2_CRK 277 281 PF00017 0.511
LIG_SH2_NCK_1 277 281 PF00017 0.431
LIG_SH2_PTP2 49 52 PF00017 0.453
LIG_SH2_STAP1 277 281 PF00017 0.484
LIG_SH2_STAT5 257 260 PF00017 0.516
LIG_SH2_STAT5 49 52 PF00017 0.453
LIG_SH3_3 102 108 PF00018 0.431
LIG_SH3_3 312 318 PF00018 0.534
LIG_SUMO_SIM_anti_2 278 284 PF11976 0.418
LIG_SUMO_SIM_par_1 43 48 PF11976 0.511
LIG_TRAF2_1 133 136 PF00917 0.420
LIG_TRAF2_1 232 235 PF00917 0.511
LIG_TYR_ITIM 275 280 PF00017 0.431
LIG_TYR_ITIM 47 52 PF00017 0.453
MOD_CK2_1 130 136 PF00069 0.450
MOD_CK2_1 229 235 PF00069 0.487
MOD_GlcNHglycan 132 135 PF01048 0.332
MOD_GlcNHglycan 74 77 PF01048 0.215
MOD_GlcNHglycan 91 94 PF01048 0.220
MOD_GSK3_1 140 147 PF00069 0.418
MOD_GSK3_1 260 267 PF00069 0.430
MOD_GSK3_1 304 311 PF00069 0.636
MOD_N-GLC_1 332 337 PF02516 0.453
MOD_N-GLC_1 54 59 PF02516 0.207
MOD_NEK2_1 144 149 PF00069 0.511
MOD_NEK2_1 258 263 PF00069 0.521
MOD_NEK2_1 332 337 PF00069 0.704
MOD_PIKK_1 144 150 PF00454 0.418
MOD_PIKK_1 230 236 PF00454 0.511
MOD_PKA_2 288 294 PF00069 0.444
MOD_Plk_1 258 264 PF00069 0.418
MOD_Plk_1 26 32 PF00069 0.418
MOD_Plk_1 54 60 PF00069 0.407
MOD_Plk_4 54 60 PF00069 0.420
MOD_SUMO_for_1 9 12 PF00179 0.523
TRG_DiLeu_BaEn_2 242 248 PF01217 0.431
TRG_ENDOCYTIC_2 257 260 PF00928 0.431
TRG_ENDOCYTIC_2 277 280 PF00928 0.321
TRG_ENDOCYTIC_2 49 52 PF00928 0.484
TRG_ER_diArg_1 34 36 PF00400 0.409
TRG_NLS_MonoExtN_4 249 255 PF00514 0.453
TRG_Pf-PMV_PEXEL_1 306 310 PF00026 0.585

Homologs

Protein Taxonomy Sequence identity Coverage
A0A0N0P8L4 Leptomonas seymouri 26% 76%
A0A0N1I3K4 Leptomonas seymouri 88% 100%
A0A0S4IYI3 Bodo saltans 30% 93%
A0A0S4JFX1 Bodo saltans 49% 100%
A0A1X0NZD0 Trypanosomatidae 68% 100%
A0A1X0P6H8 Trypanosomatidae 29% 84%
A0A3R7MJ28 Trypanosoma rangeli 30% 86%
A0A3S5H758 Leishmania donovani 26% 76%
A0A3S7X218 Leishmania donovani 98% 100%
A0A422NUV2 Trypanosoma rangeli 69% 100%
A3MXZ5 Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1) 28% 100%
A4HA24 Leishmania braziliensis 26% 100%
A4HH22 Leishmania braziliensis 93% 100%
A4HY87 Leishmania infantum 26% 76%
A4I451 Leishmania infantum 98% 100%
A4WNA4 Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321 / PZ6) 28% 100%
A5UN55 Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS) 28% 100%
B0R4Y2 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) 26% 100%
B1YC30 Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta) 29% 100%
B8YB56 Saccharolobus shibatae 27% 100%
C3MJP7 Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) 27% 100%
C3MZ05 Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) 27% 100%
C3N054 Sulfolobus islandicus (strain M.16.27) 27% 100%
C3N8R8 Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) 27% 100%
C3NMQ0 Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) 27% 100%
C4KJ93 Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) 27% 100%
C9ZKR1 Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) 57% 100%
E9ADL6 Leishmania major 98% 100%
E9AS18 Leishmania mexicana (strain MHOM/GT/2001/U1103) 26% 78%
O15160 Homo sapiens 28% 97%
O26144 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) 30% 100%
O28002 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) 34% 100%
O59303 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) 30% 100%
O94616 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 28% 97%
P07703 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 29% 100%
P0CG28 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) 29% 100%
P16370 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 31% 100%
P16925 Tetrahymena thermophila 34% 100%
P19387 Homo sapiens 30% 100%
P37382 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 30% 100%
P39471 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) 28% 100%
P52432 Mus musculus 28% 97%
P95989 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) 28% 100%
P97760 Mus musculus 30% 100%
Q2NFZ6 Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) 30% 100%
Q32L22 Bos taurus 30% 97%
Q39211 Arabidopsis thaliana 38% 100%
Q39212 Arabidopsis thaliana 37% 100%
Q3IQT6 Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara) 27% 100%
Q3T0Q3 Bos taurus 30% 100%
Q4QDF5 Leishmania major 27% 100%
Q54DH7 Dictyostelium discoideum 37% 100%
Q54SN4 Dictyostelium discoideum 31% 98%
Q5JJF4 Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) 29% 100%
Q6KZP5 Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) 24% 100%
Q8PV16 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) 28% 100%
Q8TVB8 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) 29% 100%
Q8ZYQ3 Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) 28% 100%
Q96YW0 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) 28% 100%
Q9HQJ4 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) 26% 100%
Q9V198 Pyrococcus abyssi (strain GE5 / Orsay) 30% 100%
V5BBX7 Trypanosoma cruzi 30% 86%
V5BUI6 Trypanosoma cruzi 68% 100%

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LeishMANIAdb - Server version: v0.0.2. - Database version: v0.0.1. - ChangeLog - © 2022-2025 Protein Bioinformatics Research Group, Institute of Enzymology, RCNS