Branchpoint-bridging protein

Quick info Annotations Localization Phosphorylation Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

branch point binding protein - putative

Species:

Leishmania infantum

UniProt:

A4IDV6_LEIIN

TriTrypDb:

LINF_360063900

Length:

289

Annotations

Annotations by Jardim et al.

Ribosomal Protein, branch point binding

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	yes	yes: 25

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0005681	spliceosomal complex	3	12
GO:0032991	protein-containing complex	1	12
GO:0140513	nuclear protein-containing complex	2	12
GO:1990904	ribonucleoprotein complex	2	12
GO:0005634	nucleus	5	1
GO:0005654	nucleoplasm	2	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0110165	cellular anatomical entity	1	2
GO:0016020	membrane	2	1

Phosphorylation

Promastigote: 273

Expansion

Sequence features

A4IDV6

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4IDV6

Function

Biological processes
Term	Name	Level	Count
GO:0000375	RNA splicing, via transesterification reactions	8	12
GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	9	12
GO:0000398	mRNA splicing, via spliceosome	8	12
GO:0006139	nucleobase-containing compound metabolic process	3	12
GO:0006396	RNA processing	6	12
GO:0006397	mRNA processing	7	12
GO:0006725	cellular aromatic compound metabolic process	3	12
GO:0006807	nitrogen compound metabolic process	2	12
GO:0008152	metabolic process	1	12
GO:0008380	RNA splicing	7	12
GO:0009987	cellular process	1	12
GO:0016070	RNA metabolic process	5	12
GO:0016071	mRNA metabolic process	6	12
GO:0034641	cellular nitrogen compound metabolic process	3	12
GO:0043170	macromolecule metabolic process	3	12
GO:0044237	cellular metabolic process	2	12
GO:0044238	primary metabolic process	2	12
GO:0046483	heterocycle metabolic process	3	12
GO:0071704	organic substance metabolic process	2	12
GO:0090304	nucleic acid metabolic process	4	12
GO:1901360	organic cyclic compound metabolic process	3	12
GO:0010468	regulation of gene expression	5	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	5	1
GO:0019222	regulation of metabolic process	3	1
GO:0031323	regulation of cellular metabolic process	4	1
GO:0043484	regulation of RNA splicing	6	1
GO:0048024	regulation of mRNA splicing, via spliceosome	7	1
GO:0050684	regulation of mRNA processing	7	1
GO:0050789	regulation of biological process	2	1
GO:0050794	regulation of cellular process	3	1
GO:0051171	regulation of nitrogen compound metabolic process	4	1
GO:0051252	regulation of RNA metabolic process	5	1
GO:0060255	regulation of macromolecule metabolic process	4	1
GO:0065007	biological regulation	1	1
GO:0080090	regulation of primary metabolic process	4	1
GO:1903311	regulation of mRNA metabolic process	6	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	12
GO:0003723	RNA binding	4	12
GO:0005488	binding	1	12
GO:0008270	zinc ion binding	6	12
GO:0036002	pre-mRNA binding	5	12
GO:0043167	ion binding	2	12
GO:0043169	cation binding	3	12
GO:0045131	pre-mRNA branch point binding	6	12
GO:0046872	metal ion binding	4	12
GO:0046914	transition metal ion binding	5	12
GO:0097159	organic cyclic compound binding	2	12
GO:1901363	heterocyclic compound binding	2	12
GO:0003729	mRNA binding	5	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	118	120	PF00675	0.424
CLV_NRD_NRD_1	218	220	PF00675	0.475
CLV_NRD_NRD_1	238	240	PF00675	0.530
CLV_NRD_NRD_1	265	267	PF00675	0.775
CLV_PCSK_KEX2_1	118	120	PF00082	0.404
CLV_PCSK_KEX2_1	217	219	PF00082	0.431
CLV_PCSK_KEX2_1	238	240	PF00082	0.530
CLV_PCSK_KEX2_1	267	269	PF00082	0.644
CLV_PCSK_KEX2_1	87	89	PF00082	0.408
CLV_PCSK_PC1ET2_1	238	240	PF00082	0.530
CLV_PCSK_PC1ET2_1	267	269	PF00082	0.639
CLV_PCSK_PC1ET2_1	87	89	PF00082	0.408
CLV_PCSK_PC7_1	213	219	PF00082	0.472
CLV_PCSK_SKI1_1	159	163	PF00082	0.289
CLV_PCSK_SKI1_1	37	41	PF00082	0.413
CLV_TASPASE1	222	228	PF01112	0.586
DEG_APCC_DBOX_1	36	44	PF00400	0.411
DEG_COP1_1	10	22	PF00400	0.533
DOC_PP1_RVXF_1	116	123	PF00149	0.497
DOC_PP1_RVXF_1	196	202	PF00149	0.467
DOC_PP2B_LxvP_1	17	20	PF13499	0.482
DOC_USP7_MATH_1	110	114	PF00917	0.613
DOC_USP7_MATH_2	2	8	PF00917	0.661
DOC_WW_Pin1_4	270	275	PF00397	0.556
DOC_WW_Pin1_4	76	81	PF00397	0.479
LIG_14-3-3_CanoR_1	119	127	PF00244	0.395
LIG_14-3-3_CanoR_1	183	192	PF00244	0.481
LIG_14-3-3_CanoR_1	8	14	PF00244	0.586
LIG_Actin_WH2_2	150	168	PF00022	0.560
LIG_BIR_III_4	71	75	PF00653	0.605
LIG_FHA_1	160	166	PF00498	0.467
LIG_FHA_2	185	191	PF00498	0.562
LIG_FHA_2	192	198	PF00498	0.557
LIG_FHA_2	232	238	PF00498	0.585
LIG_FHA_2	258	264	PF00498	0.629
LIG_FHA_2	99	105	PF00498	0.552
LIG_LIR_Gen_1	11	22	PF02991	0.503
LIG_LIR_Nem_3	11	17	PF02991	0.517
LIG_LIR_Nem_3	129	135	PF02991	0.523
LIG_PDZ_Class_3	284	289	PF00595	0.546
LIG_Pex14_2	35	39	PF04695	0.378
LIG_SH2_CRK	132	136	PF00017	0.442
LIG_SH2_CRK	14	18	PF00017	0.476
LIG_SH2_GRB2like	14	17	PF00017	0.463
LIG_SH2_SRC	22	25	PF00017	0.426
LIG_SH2_STAT5	102	105	PF00017	0.561
LIG_SH2_STAT5	121	124	PF00017	0.416
LIG_SH2_STAT5	14	17	PF00017	0.463
LIG_SH2_STAT5	22	25	PF00017	0.426
LIG_SH2_STAT5	60	63	PF00017	0.409
LIG_SH3_1	62	68	PF00018	0.494
LIG_SH3_3	62	68	PF00018	0.464
LIG_TRAF2_1	187	190	PF00917	0.519
LIG_TRAF2_1	274	277	PF00917	0.638
MOD_CK1_1	7	13	PF00069	0.509
MOD_CK2_1	184	190	PF00069	0.513
MOD_CK2_1	191	197	PF00069	0.491
MOD_CK2_1	231	237	PF00069	0.456
MOD_CK2_1	257	263	PF00069	0.627
MOD_CK2_1	270	276	PF00069	0.574
MOD_CK2_1	98	104	PF00069	0.479
MOD_Cter_Amidation	264	267	PF01082	0.684
MOD_GlcNHglycan	71	75	PF01048	0.502
MOD_GSK3_1	18	25	PF00069	0.582
MOD_GSK3_1	70	77	PF00069	0.659
MOD_N-GLC_1	110	115	PF02516	0.525
MOD_N-GLC_1	74	79	PF02516	0.530
MOD_N-GLC_2	55	57	PF02516	0.451
MOD_NEK2_1	165	170	PF00069	0.467
MOD_NEK2_1	51	56	PF00069	0.418
MOD_NEK2_1	98	103	PF00069	0.543
MOD_PKA_2	182	188	PF00069	0.467
MOD_PKA_2	7	13	PF00069	0.563
MOD_Plk_4	18	24	PF00069	0.497
MOD_ProDKin_1	270	276	PF00069	0.551
MOD_ProDKin_1	76	82	PF00069	0.482
TRG_DiLeu_BaEn_2	280	286	PF01217	0.630
TRG_DiLeu_BaEn_2	30	36	PF01217	0.488
TRG_DiLeu_BaEn_4	277	283	PF01217	0.621
TRG_ENDOCYTIC_2	132	135	PF00928	0.442
TRG_ENDOCYTIC_2	14	17	PF00928	0.478
TRG_ER_diArg_1	118	120	PF00400	0.424
TRG_ER_diArg_1	217	219	PF00400	0.491
TRG_ER_diArg_1	88	91	PF00400	0.466
TRG_NLS_MonoExtN_4	238	243	PF00514	0.525
TRG_Pf-PMV_PEXEL_1	139	144	PF00026	0.323
TRG_Pf-PMV_PEXEL_1	42	47	PF00026	0.372

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1IAH9	Leptomonas seymouri	82%	100%
A0A0S4JQ68	Bodo saltans	44%	99%
A0A1X0P0K4	Trypanosomatidae	54%	100%
A0A3Q8IJ64	Leishmania donovani	100%	100%
A0A3R7MP14	Trypanosoma rangeli	53%	100%
A4HQ57	Leishmania braziliensis	93%	98%
D0A460	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	61%	100%
E9ATX7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	99%	100%
Q4Q0L9	Leishmania major	99%	100%
V5B558	Trypanosoma cruzi	54%	95%