RAP domain-containing protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

mitochondrial RNA binding complex 1 subunit - putative

Species:

Leishmania infantum

UniProt:

A4IDQ5_LEIIN

TriTrypDb:

LINF_360057200

Length:

550

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 1, no: 14
NetGPI	no	yes: 0, no: 15

Cellular components
Term	Name	Level	Count
GO:0005739	mitochondrion	5	1
GO:0005759	mitochondrial matrix	5	1
GO:0020023	kinetoplast	2	1
GO:0031974	membrane-enclosed lumen	2	1
GO:0035770	ribonucleoprotein granule	3	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043228	non-membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0043232	intracellular non-membrane-bounded organelle	4	1
GO:0043233	organelle lumen	3	1
GO:0070013	intracellular organelle lumen	4	1
GO:0099080	supramolecular complex	2	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

A4IDQ5

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4IDQ5

Function

Biological processes
Term	Name	Level	Count
GO:0000959	mitochondrial RNA metabolic process	6	1
GO:0000963	mitochondrial RNA processing	6	1
GO:0006139	nucleobase-containing compound metabolic process	3	1
GO:0006396	RNA processing	6	1
GO:0006725	cellular aromatic compound metabolic process	3	1
GO:0006807	nitrogen compound metabolic process	2	1
GO:0008152	metabolic process	1	1
GO:0009451	RNA modification	5	1
GO:0009892	negative regulation of metabolic process	4	1
GO:0009893	positive regulation of metabolic process	4	1
GO:0009894	regulation of catabolic process	4	1
GO:0009895	negative regulation of catabolic process	5	1
GO:0009987	cellular process	1	1
GO:0010467	gene expression	4	1
GO:0010468	regulation of gene expression	5	1
GO:0010604	positive regulation of macromolecule metabolic process	5	1
GO:0010605	negative regulation of macromolecule metabolic process	5	1
GO:0010608	post-transcriptional regulation of gene expression	6	1
GO:0010628	positive regulation of gene expression	6	1
GO:0016070	RNA metabolic process	5	1
GO:0016553	base conversion or substitution editing	6	1
GO:0016554	cytidine to uridine editing	7	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	5	1
GO:0019222	regulation of metabolic process	3	1
GO:0031323	regulation of cellular metabolic process	4	1
GO:0031324	negative regulation of cellular metabolic process	5	1
GO:0031329	regulation of cellular catabolic process	5	1
GO:0031330	negative regulation of cellular catabolic process	6	1
GO:0034641	cellular nitrogen compound metabolic process	3	1
GO:0043170	macromolecule metabolic process	3	1
GO:0043412	macromolecule modification	4	1
GO:0043487	regulation of RNA stability	3	1
GO:0043488	regulation of mRNA stability	4	1
GO:0043489	RNA stabilization	4	1
GO:0044237	cellular metabolic process	2	1
GO:0044238	primary metabolic process	2	1
GO:0044528	regulation of mitochondrial mRNA stability	5	1
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	6	1
GO:0046483	heterocycle metabolic process	3	1
GO:0048255	mRNA stabilization	5	1
GO:0048518	positive regulation of biological process	3	1
GO:0048519	negative regulation of biological process	3	1
GO:0048523	negative regulation of cellular process	4	1
GO:0050789	regulation of biological process	2	1
GO:0050794	regulation of cellular process	3	1
GO:0051171	regulation of nitrogen compound metabolic process	4	1
GO:0051172	negative regulation of nitrogen compound metabolic process	5	1
GO:0051252	regulation of RNA metabolic process	5	1
GO:0051253	negative regulation of RNA metabolic process	6	1
GO:0060255	regulation of macromolecule metabolic process	4	1
GO:0061013	regulation of mRNA catabolic process	6	1
GO:0065007	biological regulation	1	1
GO:0065008	regulation of biological quality	2	1
GO:0071704	organic substance metabolic process	2	1
GO:0080090	regulation of primary metabolic process	4	1
GO:0090304	nucleic acid metabolic process	4	1
GO:0140053	mitochondrial gene expression	5	1
GO:1901360	organic cyclic compound metabolic process	3	1
GO:1902369	negative regulation of RNA catabolic process	7	1
GO:1902373	negative regulation of mRNA catabolic process	7	1
GO:1903311	regulation of mRNA metabolic process	6	1
GO:1903312	negative regulation of mRNA metabolic process	7	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	1
GO:0003723	RNA binding	4	1
GO:0005488	binding	1	1
GO:0097159	organic cyclic compound binding	2	1
GO:1901363	heterocyclic compound binding	2	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	266	270	PF00656	0.380
CLV_NRD_NRD_1	100	102	PF00675	0.538
CLV_NRD_NRD_1	140	142	PF00675	0.512
CLV_NRD_NRD_1	218	220	PF00675	0.463
CLV_PCSK_KEX2_1	100	102	PF00082	0.577
CLV_PCSK_KEX2_1	185	187	PF00082	0.379
CLV_PCSK_KEX2_1	218	220	PF00082	0.482
CLV_PCSK_KEX2_1	287	289	PF00082	0.506
CLV_PCSK_PC1ET2_1	185	187	PF00082	0.418
CLV_PCSK_PC1ET2_1	287	289	PF00082	0.545
CLV_PCSK_SKI1_1	182	186	PF00082	0.418
CLV_PCSK_SKI1_1	218	222	PF00082	0.451
CLV_PCSK_SKI1_1	337	341	PF00082	0.466
CLV_PCSK_SKI1_1	474	478	PF00082	0.478
CLV_PCSK_SKI1_1	525	529	PF00082	0.503
CLV_Separin_Metazoa	70	74	PF03568	0.522
DEG_APCC_DBOX_1	36	44	PF00400	0.437
DOC_CYCLIN_RxL_1	182	192	PF00134	0.533
DOC_CYCLIN_yClb5_NLxxxL_5	305	314	PF00134	0.386
DOC_CYCLIN_yCln2_LP_2	416	422	PF00134	0.448
DOC_MAPK_DCC_7	453	463	PF00069	0.411
DOC_MAPK_gen_1	287	293	PF00069	0.445
DOC_MAPK_gen_1	37	45	PF00069	0.420
DOC_MAPK_gen_1	408	416	PF00069	0.440
DOC_MAPK_gen_1	497	505	PF00069	0.431
DOC_MAPK_MEF2A_6	408	416	PF00069	0.450
DOC_PP4_FxxP_1	346	349	PF00568	0.461
DOC_WW_Pin1_4	104	109	PF00397	0.621
DOC_WW_Pin1_4	117	122	PF00397	0.475
DOC_WW_Pin1_4	155	160	PF00397	0.424
DOC_WW_Pin1_4	16	21	PF00397	0.623
DOC_WW_Pin1_4	525	530	PF00397	0.529
LIG_14-3-3_CanoR_1	27	32	PF00244	0.587
LIG_Actin_WH2_2	159	175	PF00022	0.438
LIG_Actin_WH2_2	87	102	PF00022	0.543
LIG_APCC_ABBA_1	291	296	PF00400	0.368
LIG_BIR_II_1	1	5	PF00653	0.634
LIG_BRCT_BRCA1_1	250	254	PF00533	0.473
LIG_BRCT_BRCA1_2	250	256	PF00533	0.478
LIG_EH_1	87	91	PF12763	0.579
LIG_FHA_1	189	195	PF00498	0.487
LIG_FHA_1	201	207	PF00498	0.439
LIG_FHA_1	272	278	PF00498	0.410
LIG_FHA_1	359	365	PF00498	0.451
LIG_FHA_1	374	380	PF00498	0.291
LIG_FHA_1	424	430	PF00498	0.383
LIG_FHA_1	473	479	PF00498	0.457
LIG_FHA_1	60	66	PF00498	0.500
LIG_FHA_2	135	141	PF00498	0.568
LIG_FHA_2	279	285	PF00498	0.479
LIG_HCF-1_HBM_1	510	513	PF13415	0.476
LIG_LIR_Apic_2	343	349	PF02991	0.477
LIG_LIR_Gen_1	234	243	PF02991	0.395
LIG_LIR_Gen_1	251	262	PF02991	0.181
LIG_LIR_Gen_1	279	285	PF02991	0.481
LIG_LIR_Gen_1	32	43	PF02991	0.466
LIG_LIR_Gen_1	325	336	PF02991	0.474
LIG_LIR_Gen_1	454	463	PF02991	0.396
LIG_LIR_Nem_3	234	239	PF02991	0.400
LIG_LIR_Nem_3	251	257	PF02991	0.185
LIG_LIR_Nem_3	279	283	PF02991	0.429
LIG_LIR_Nem_3	32	38	PF02991	0.559
LIG_LIR_Nem_3	325	331	PF02991	0.478
LIG_LIR_Nem_3	415	420	PF02991	0.545
LIG_LIR_Nem_3	454	458	PF02991	0.409
LIG_LIR_Nem_3	510	516	PF02991	0.496
LIG_PCNA_yPIPBox_3	308	319	PF02747	0.425
LIG_Pex14_2	276	280	PF04695	0.436
LIG_Pex14_2	448	452	PF04695	0.426
LIG_SH2_CRK	214	218	PF00017	0.527
LIG_SH2_CRK	513	517	PF00017	0.492
LIG_SH2_GRB2like	236	239	PF00017	0.353
LIG_SH2_NCK_1	440	444	PF00017	0.382
LIG_SH2_PTP2	236	239	PF00017	0.390
LIG_SH2_SRC	236	239	PF00017	0.368
LIG_SH2_STAP1	250	254	PF00017	0.496
LIG_SH2_STAP1	338	342	PF00017	0.452
LIG_SH2_STAP1	440	444	PF00017	0.411
LIG_SH2_STAT3	33	36	PF00017	0.538
LIG_SH2_STAT3	439	442	PF00017	0.487
LIG_SH2_STAT5	236	239	PF00017	0.375
LIG_SH2_STAT5	33	36	PF00017	0.524
LIG_SH2_STAT5	440	443	PF00017	0.347
LIG_SH2_STAT5	501	504	PF00017	0.497
LIG_SH3_3	108	114	PF00018	0.532
LIG_SH3_3	526	532	PF00018	0.507
LIG_SH3_3	83	89	PF00018	0.464
LIG_Sin3_3	295	302	PF02671	0.412
LIG_SUMO_SIM_anti_2	386	392	PF11976	0.369
LIG_SUMO_SIM_par_1	296	304	PF11976	0.441
LIG_TRAF2_1	114	117	PF00917	0.617
LIG_TRAF2_1	491	494	PF00917	0.528
LIG_TYR_ITIM	432	437	PF00017	0.522
LIG_UBA3_1	240	248	PF00899	0.511
LIG_WRC_WIRS_1	277	282	PF05994	0.477
LIG_WRC_WIRS_1	479	484	PF05994	0.489
MOD_CDK_SPK_2	104	109	PF00069	0.577
MOD_CK1_1	120	126	PF00069	0.410
MOD_CK1_1	200	206	PF00069	0.458
MOD_CK1_1	355	361	PF00069	0.499
MOD_CK1_1	481	487	PF00069	0.514
MOD_CK2_1	104	110	PF00069	0.540
MOD_CK2_1	134	140	PF00069	0.560
MOD_CK2_1	192	198	PF00069	0.480
MOD_CK2_1	453	459	PF00069	0.423
MOD_CK2_1	488	494	PF00069	0.468
MOD_CK2_1	64	70	PF00069	0.554
MOD_Cter_Amidation	285	288	PF01082	0.533
MOD_GlcNHglycan	192	197	PF01048	0.437
MOD_GlcNHglycan	328	331	PF01048	0.455
MOD_GlcNHglycan	354	357	PF01048	0.426
MOD_GSK3_1	16	23	PF00069	0.624
MOD_GSK3_1	188	195	PF00069	0.436
MOD_N-GLC_1	104	109	PF02516	0.605
MOD_N-GLC_1	59	64	PF02516	0.540
MOD_NEK2_1	197	202	PF00069	0.363
MOD_NEK2_1	206	211	PF00069	0.379
MOD_NEK2_1	276	281	PF00069	0.467
MOD_NEK2_1	310	315	PF00069	0.415
MOD_NEK2_1	486	491	PF00069	0.425
MOD_NEK2_1	90	95	PF00069	0.471
MOD_NEK2_2	213	218	PF00069	0.542
MOD_NEK2_2	472	477	PF00069	0.525
MOD_PIKK_1	157	163	PF00454	0.395
MOD_PIKK_1	271	277	PF00454	0.465
MOD_PIKK_1	438	444	PF00454	0.425
MOD_PIKK_1	481	487	PF00454	0.524
MOD_PKA_2	423	429	PF00069	0.480
MOD_Plk_1	192	198	PF00069	0.436
MOD_Plk_1	373	379	PF00069	0.404
MOD_Plk_1	453	459	PF00069	0.423
MOD_Plk_1	59	65	PF00069	0.498
MOD_Plk_2-3	300	306	PF00069	0.519
MOD_Plk_2-3	454	460	PF00069	0.430
MOD_Plk_4	120	126	PF00069	0.430
MOD_Plk_4	310	316	PF00069	0.400
MOD_Plk_4	478	484	PF00069	0.467
MOD_Plk_4	52	58	PF00069	0.510
MOD_Plk_4	90	96	PF00069	0.447
MOD_ProDKin_1	104	110	PF00069	0.628
MOD_ProDKin_1	117	123	PF00069	0.465
MOD_ProDKin_1	155	161	PF00069	0.421
MOD_ProDKin_1	16	22	PF00069	0.618
MOD_ProDKin_1	525	531	PF00069	0.516
MOD_SUMO_for_1	505	508	PF00179	0.527
MOD_SUMO_rev_2	139	143	PF00179	0.462
TRG_DiLeu_BaEn_1	534	539	PF01217	0.473
TRG_ENDOCYTIC_2	214	217	PF00928	0.456
TRG_ENDOCYTIC_2	236	239	PF00928	0.405
TRG_ENDOCYTIC_2	434	437	PF00928	0.451
TRG_ENDOCYTIC_2	513	516	PF00928	0.405
TRG_ER_diArg_1	217	219	PF00400	0.483
TRG_ER_diArg_1	37	40	PF00400	0.460
TRG_ER_diArg_1	411	414	PF00400	0.434
TRG_ER_diArg_1	99	101	PF00400	0.565
TRG_NES_CRM1_1	312	326	PF08389	0.506
TRG_Pf-PMV_PEXEL_1	141	145	PF00026	0.552
TRG_Pf-PMV_PEXEL_1	185	189	PF00026	0.543
TRG_Pf-PMV_PEXEL_1	73	77	PF00026	0.413

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I018	Leptomonas seymouri	69%	100%
A0A0S4KHA2	Bodo saltans	54%	100%
A0A1X0P0I1	Trypanosomatidae	22%	94%
A0A1X0P129	Trypanosomatidae	56%	100%
A0A3R7LEP3	Trypanosoma rangeli	24%	92%
A0A3R7P546	Trypanosoma rangeli	57%	100%
A0A3S7XBP0	Leishmania donovani	100%	100%
A4HPZ4	Leishmania braziliensis	87%	100%
D0A4E6	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	23%	96%
D0A4E7	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	57%	100%
E9ATR1	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
Q4Q0T6	Leishmania major	97%	100%
V5B501	Trypanosoma cruzi	24%	90%
V5BKI7	Trypanosoma cruzi	58%	100%