Nucleic acid binding, small nuclear ribonucleo
| Source | Evidence on protein | Close homologs |
|---|---|---|
| Cuervo et al. | no | yes: 0 |
| Hassani et al. | no | yes: 0 |
| Forrest at al. (metacyclic) | no | yes: 0 |
| Forrest at al. (procyclic) | no | yes: 0 |
| Silverman et al. | no | yes: 0 |
| Pissara et al. | no | yes: 0 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
| Pires et al. | no | yes: 0 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
| Silverman et al. | no | yes: 0 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
| Jamdhade et al. | no | yes: 0 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
| DeepLoc | ||
| SignalP6 | no | yes: 0, no: 10 |
| NetGPI | no | yes: 0, no: 10 |
| Term | Name | Level | Count |
|---|---|---|---|
| GO:0005681 | spliceosomal complex | 3 | 10 |
| GO:0005829 | cytosol | 2 | 10 |
| GO:0032991 | protein-containing complex | 1 | 11 |
| GO:0110165 | cellular anatomical entity | 1 | 11 |
| GO:0140513 | nuclear protein-containing complex | 2 | 10 |
| GO:1990904 | ribonucleoprotein complex | 2 | 11 |
| GO:0000243 | commitment complex | 5 | 1 |
| GO:0005682 | U5 snRNP | 5 | 1 |
| GO:0005684 | U2-type spliceosomal complex | 4 | 1 |
| GO:0005685 | U1 snRNP | 5 | 1 |
| GO:0005686 | U2 snRNP | 5 | 1 |
| GO:0005687 | U4 snRNP | 5 | 1 |
| GO:0005689 | U12-type spliceosomal complex | 4 | 1 |
| GO:0005730 | nucleolus | 5 | 1 |
| GO:0030532 | small nuclear ribonucleoprotein complex | 3 | 1 |
| GO:0034715 | pICln-Sm protein complex | 3 | 1 |
| GO:0034719 | SMN-Sm protein complex | 3 | 1 |
| GO:0043226 | organelle | 2 | 2 |
| GO:0043228 | non-membrane-bounded organelle | 3 | 1 |
| GO:0043229 | intracellular organelle | 3 | 2 |
| GO:0043232 | intracellular non-membrane-bounded organelle | 4 | 1 |
| GO:0071011 | precatalytic spliceosome | 4 | 1 |
| GO:0071013 | catalytic step 2 spliceosome | 3 | 1 |
| GO:0071024 | SL snRNP | 5 | 1 |
| GO:0097525 | spliceosomal snRNP complex | 4 | 1 |
| GO:0097526 | spliceosomal tri-snRNP complex | 5 | 1 |
| GO:0120114 | Sm-like protein family complex | 2 | 1 |
| GO:1902494 | catalytic complex | 2 | 1 |
| GO:0005634 | nucleus | 5 | 1 |
| GO:0043227 | membrane-bounded organelle | 3 | 1 |
| GO:0043231 | intracellular membrane-bounded organelle | 4 | 1 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
| Pescher et al. (upgregulation) | no | yes: 0 |
| Source | Evidence on protein | Close homologs |
|---|---|---|
|
Lahav et al. - mRNA
- Protein
|
Related structures:
AlphaFold database: A4IAF5
| Term | Name | Level | Count |
|---|---|---|---|
| GO:0000387 | spliceosomal snRNP assembly | 7 | 10 |
| GO:0009987 | cellular process | 1 | 11 |
| GO:0016043 | cellular component organization | 3 | 10 |
| GO:0022607 | cellular component assembly | 4 | 10 |
| GO:0022618 | ribonucleoprotein complex assembly | 6 | 10 |
| GO:0043933 | protein-containing complex organization | 4 | 10 |
| GO:0065003 | protein-containing complex assembly | 5 | 10 |
| GO:0071826 | ribonucleoprotein complex subunit organization | 5 | 10 |
| GO:0071840 | cellular component organization or biogenesis | 2 | 10 |
| GO:0006139 | nucleobase-containing compound metabolic process | 3 | 1 |
| GO:0006396 | RNA processing | 6 | 1 |
| GO:0006725 | cellular aromatic compound metabolic process | 3 | 1 |
| GO:0006807 | nitrogen compound metabolic process | 2 | 1 |
| GO:0008152 | metabolic process | 1 | 1 |
| GO:0016070 | RNA metabolic process | 5 | 1 |
| GO:0034641 | cellular nitrogen compound metabolic process | 3 | 1 |
| GO:0043170 | macromolecule metabolic process | 3 | 1 |
| GO:0044237 | cellular metabolic process | 2 | 1 |
| GO:0044238 | primary metabolic process | 2 | 1 |
| GO:0046483 | heterocycle metabolic process | 3 | 1 |
| GO:0071704 | organic substance metabolic process | 2 | 1 |
| GO:0090304 | nucleic acid metabolic process | 4 | 1 |
| GO:1901360 | organic cyclic compound metabolic process | 3 | 1 |
| Term | Name | Level | Count |
|---|---|---|---|
| GO:0003676 | nucleic acid binding | 3 | 1 |
| GO:0003723 | RNA binding | 4 | 1 |
| GO:0005488 | binding | 1 | 1 |
| GO:0097159 | organic cyclic compound binding | 2 | 1 |
| GO:1901363 | heterocyclic compound binding | 2 | 1 |
| Leishmania | From | To | Domain/Motif | Score |
|---|---|---|---|---|
| CLV_C14_Caspase3-7 | 56 | 60 | PF00656 | 0.427 |
| CLV_C14_Caspase3-7 | 96 | 100 | PF00656 | 0.509 |
| CLV_NRD_NRD_1 | 106 | 108 | PF00675 | 0.481 |
| CLV_PCSK_KEX2_1 | 108 | 110 | PF00082 | 0.488 |
| CLV_PCSK_PC1ET2_1 | 108 | 110 | PF00082 | 0.491 |
| CLV_PCSK_SKI1_1 | 44 | 48 | PF00082 | 0.267 |
| CLV_PCSK_SKI1_1 | 8 | 12 | PF00082 | 0.273 |
| DOC_CYCLIN_RxL_1 | 5 | 12 | PF00134 | 0.280 |
| DOC_MAPK_gen_1 | 54 | 63 | PF00069 | 0.467 |
| DOC_PP1_RVXF_1 | 6 | 12 | PF00149 | 0.302 |
| DOC_PP4_FxxP_1 | 71 | 74 | PF00568 | 0.426 |
| DOC_USP7_UBL2_3 | 44 | 48 | PF12436 | 0.411 |
| DOC_WW_Pin1_4 | 77 | 82 | PF00397 | 0.327 |
| LIG_14-3-3_CterR_2 | 109 | 113 | PF00244 | 0.584 |
| LIG_Actin_WH2_2 | 2 | 19 | PF00022 | 0.428 |
| LIG_Actin_WH2_2 | 28 | 46 | PF00022 | 0.467 |
| LIG_Actin_WH2_2 | 70 | 87 | PF00022 | 0.505 |
| LIG_BIR_II_1 | 1 | 5 | PF00653 | 0.387 |
| LIG_FHA_1 | 22 | 28 | PF00498 | 0.423 |
| LIG_FHA_2 | 29 | 35 | PF00498 | 0.372 |
| LIG_FHA_2 | 54 | 60 | PF00498 | 0.427 |
| LIG_FHA_2 | 94 | 100 | PF00498 | 0.541 |
| LIG_Integrin_RGD_1 | 97 | 99 | PF01839 | 0.499 |
| LIG_Rb_pABgroove_1 | 5 | 13 | PF01858 | 0.311 |
| LIG_TRAF2_1 | 31 | 34 | PF00917 | 0.393 |
| LIG_UBA3_1 | 10 | 17 | PF00899 | 0.262 |
| MOD_CK2_1 | 28 | 34 | PF00069 | 0.409 |
| MOD_GSK3_1 | 53 | 60 | PF00069 | 0.437 |
| MOD_NEK2_1 | 1 | 6 | PF00069 | 0.489 |
| MOD_NEK2_1 | 103 | 108 | PF00069 | 0.554 |
| MOD_PK_1 | 57 | 63 | PF00069 | 0.441 |
| MOD_PKA_2 | 63 | 69 | PF00069 | 0.404 |
| MOD_Plk_4 | 57 | 63 | PF00069 | 0.408 |
| MOD_ProDKin_1 | 77 | 83 | PF00069 | 0.331 |
| MOD_SUMO_rev_2 | 95 | 103 | PF00179 | 0.468 |
| TRG_NLS_MonoExtC_3 | 106 | 111 | PF00514 | 0.499 |
| TRG_NLS_MonoExtN_4 | 107 | 112 | PF00514 | 0.493 |
| Protein | Taxonomy | Sequence identity | Coverage |
|---|---|---|---|
| A0A0N1HYK5 | Leptomonas seymouri | 86% | 100% |
| A0A0S4KRF8 | Bodo saltans | 50% | 90% |
| A0A1X0PAE8 | Trypanosomatidae | 65% | 98% |
| A0A3Q8IKS2 | Leishmania donovani | 33% | 97% |
| A0A3S7X8L1 | Leishmania donovani | 99% | 100% |
| A0A3S7XAB5 | Leishmania donovani | 32% | 80% |
| A0A422NSZ6 | Trypanosoma rangeli | 60% | 98% |
| A4HBA7 | Leishmania braziliensis | 95% | 100% |
| A4HK52 | Leishmania braziliensis | 32% | 100% |
| A4HNR2 | Leishmania braziliensis | 34% | 80% |
| A4ICT3 | Leishmania infantum | 32% | 80% |
| C9ZLT9 | Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) | 51% | 98% |
| E9B5H9 | Leishmania mexicana (strain MHOM/GT/2001/U1103) | 97% | 100% |
| O44437 | Drosophila melanogaster | 34% | 75% |
| P43321 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | 44% | 100% |
| P62318 | Homo sapiens | 36% | 90% |
| P62320 | Mus musculus | 36% | 90% |
| P62323 | Xenopus laevis | 36% | 90% |
| Q17348 | Caenorhabditis elegans | 36% | 83% |
| Q4Q2F6 | Leishmania major | 99% | 100% |
| Q969L4 | Homo sapiens | 25% | 92% |
| Q9LM92 | Arabidopsis thaliana | 37% | 86% |
| Q9S7E6 | Arabidopsis thaliana | 35% | 88% |
| Q9SY09 | Arabidopsis thaliana | 33% | 97% |
| Q9UUC6 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | 36% | 100% |
| Q9VU02 | Drosophila melanogaster | 31% | 91% |