LeishMANIAdb
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rRNA adenine N(6)-methyltransferase

Quick info Annotations Function or PPIs Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:
rRNA adenine N(6)-methyltransferase
Gene product:
ribosomal RNA adenine dimethylase family protein - putative
Species:
Leishmania infantum
UniProt:
A4I515_LEIIN
TriTrypDb:
LINF_300007100
Length:
374

Annotations

Annotations by Jardim et al.

Nucleic acid binding, rRNA adenine N(6)-methyltransferase

Localization

Secreted promastigote
Source Evidence on protein Close homologs
Cuervo et al. no yes: 0
Hassani et al. no yes: 0
Forrest at al. (metacyclic) no yes: 0
Forrest at al. (procyclic) no yes: 0
Silverman et al. no yes: 0
Pissara et al. no yes: 0
Secreted amastigote
Source Evidence on protein Close homologs
Pires et al. no yes: 0
Exosome
Source Evidence on protein Close homologs
Silverman et al. no yes: 0
Glycosome
Source Evidence on protein Close homologs
Jamdhade et al. no yes: 9
Predictions
Source Evidence on protein Close homologs
DeepLoc
SignalP6 no yes: 0, no: 11
NetGPI no yes: 0, no: 11
Cellular components
Term Name Level Count
GO:0005730 nucleolus 5 1
GO:0043226 organelle 2 1
GO:0043228 non-membrane-bounded organelle 3 1
GO:0043229 intracellular organelle 3 1
GO:0043232 intracellular non-membrane-bounded organelle 4 1
GO:0110165 cellular anatomical entity 1 2
GO:0016020 membrane 2 1

Expansion

Sequence features

A4I515
Sequence
MSA
Disorder
Secondary
Topology
Domains
SignalP
GPI
Phosphorylations
ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4I515

Function

Biological processes
Term Name Level Count
GO:0000154 rRNA modification 6 1
GO:0001510 RNA methylation 4 1
GO:0006139 nucleobase-containing compound metabolic process 3 1
GO:0006364 rRNA processing 8 1
GO:0006396 RNA processing 6 1
GO:0006725 cellular aromatic compound metabolic process 3 1
GO:0006807 nitrogen compound metabolic process 2 1
GO:0008152 metabolic process 1 1
GO:0009451 RNA modification 5 1
GO:0009987 cellular process 1 1
GO:0016070 RNA metabolic process 5 1
GO:0016072 rRNA metabolic process 7 1
GO:0031167 rRNA methylation 5 1
GO:0032259 methylation 2 1
GO:0034470 ncRNA processing 7 1
GO:0034641 cellular nitrogen compound metabolic process 3 1
GO:0034660 ncRNA metabolic process 6 1
GO:0043170 macromolecule metabolic process 3 1
GO:0043412 macromolecule modification 4 1
GO:0043414 macromolecule methylation 3 1
GO:0044237 cellular metabolic process 2 1
GO:0044238 primary metabolic process 2 1
GO:0044260 obsolete cellular macromolecule metabolic process 3 1
GO:0046483 heterocycle metabolic process 3 1
GO:0071704 organic substance metabolic process 2 1
GO:0090304 nucleic acid metabolic process 4 1
GO:1901360 organic cyclic compound metabolic process 3 1
Molecular functions
Term Name Level Count
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 6 12
GO:0003676 nucleic acid binding 3 12
GO:0003723 RNA binding 4 12
GO:0003824 catalytic activity 1 12
GO:0005488 binding 1 12
GO:0008168 methyltransferase activity 4 12
GO:0008170 N-methyltransferase activity 5 12
GO:0008173 RNA methyltransferase activity 4 12
GO:0008649 rRNA methyltransferase activity 5 12
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 5 12
GO:0016433 rRNA (adenine) methyltransferase activity 6 12
GO:0016740 transferase activity 2 12
GO:0016741 transferase activity, transferring one-carbon groups 3 12
GO:0097159 organic cyclic compound binding 2 12
GO:0140098 catalytic activity, acting on RNA 3 12
GO:0140102 catalytic activity, acting on a rRNA 4 12
GO:0140640 catalytic activity, acting on a nucleic acid 2 12
GO:1901363 heterocyclic compound binding 2 12

Putative motif mimicry

Leishmania From To Domain/Motif Score
CLV_NRD_NRD_1 22 24 PF00675 0.624
CLV_NRD_NRD_1 272 274 PF00675 0.229
CLV_NRD_NRD_1 298 300 PF00675 0.517
CLV_NRD_NRD_1 43 45 PF00675 0.624
CLV_PCSK_KEX2_1 137 139 PF00082 0.250
CLV_PCSK_KEX2_1 349 351 PF00082 0.335
CLV_PCSK_KEX2_1 43 45 PF00082 0.707
CLV_PCSK_KEX2_1 54 56 PF00082 0.554
CLV_PCSK_PC1ET2_1 137 139 PF00082 0.250
CLV_PCSK_PC1ET2_1 349 351 PF00082 0.335
CLV_PCSK_PC1ET2_1 54 56 PF00082 0.625
CLV_PCSK_SKI1_1 181 185 PF00082 0.254
CLV_PCSK_SKI1_1 23 27 PF00082 0.569
CLV_PCSK_SKI1_1 268 272 PF00082 0.229
CLV_PCSK_SKI1_1 30 34 PF00082 0.585
CLV_PCSK_SKI1_1 315 319 PF00082 0.718
CLV_PCSK_SKI1_1 335 339 PF00082 0.276
DEG_APCC_DBOX_1 334 342 PF00400 0.417
DEG_SPOP_SBC_1 316 320 PF00917 0.630
DOC_CKS1_1 140 145 PF01111 0.454
DOC_CKS1_1 183 188 PF01111 0.520
DOC_CYCLIN_RxL_1 265 272 PF00134 0.472
DOC_CYCLIN_RxL_1 332 340 PF00134 0.408
DOC_CYCLIN_yCln2_LP_2 80 86 PF00134 0.429
DOC_MAPK_gen_1 252 260 PF00069 0.365
DOC_MAPK_gen_1 3 12 PF00069 0.552
DOC_MAPK_MEF2A_6 252 260 PF00069 0.430
DOC_MAPK_MEF2A_6 96 104 PF00069 0.429
DOC_MAPK_RevD_3 286 300 PF00069 0.458
DOC_PP1_RVXF_1 119 126 PF00149 0.429
DOC_PP1_RVXF_1 21 28 PF00149 0.552
DOC_PP4_FxxP_1 236 239 PF00568 0.429
DOC_USP7_MATH_1 143 147 PF00917 0.479
DOC_USP7_MATH_1 173 177 PF00917 0.429
DOC_USP7_MATH_1 223 227 PF00917 0.440
DOC_USP7_MATH_1 316 320 PF00917 0.655
DOC_USP7_UBL2_3 26 30 PF12436 0.603
DOC_USP7_UBL2_3 92 96 PF12436 0.429
DOC_WW_Pin1_4 139 144 PF00397 0.429
DOC_WW_Pin1_4 182 187 PF00397 0.520
DOC_WW_Pin1_4 35 40 PF00397 0.666
LIG_14-3-3_CanoR_1 214 218 PF00244 0.429
LIG_14-3-3_CanoR_1 224 231 PF00244 0.429
LIG_BRCT_BRCA1_1 278 282 PF00533 0.429
LIG_FHA_1 106 112 PF00498 0.429
LIG_FHA_1 27 33 PF00498 0.652
LIG_FHA_1 96 102 PF00498 0.431
LIG_FHA_2 44 50 PF00498 0.527
LIG_LIR_Apic_2 235 239 PF02991 0.429
LIG_LIR_Gen_1 209 217 PF02991 0.439
LIG_LIR_Nem_3 157 163 PF02991 0.433
LIG_LIR_Nem_3 209 215 PF02991 0.439
LIG_LIR_Nem_3 261 266 PF02991 0.437
LIG_LIR_Nem_3 293 298 PF02991 0.361
LIG_LIR_Nem_3 332 337 PF02991 0.386
LIG_Pex14_2 195 199 PF04695 0.429
LIG_Pex14_2 71 75 PF04695 0.449
LIG_PTB_Apo_2 166 173 PF02174 0.429
LIG_PTB_Apo_2 69 76 PF02174 0.290
LIG_PTB_Phospho_1 166 172 PF10480 0.429
LIG_Rb_pABgroove_1 286 294 PF01858 0.394
LIG_SH2_CRK 212 216 PF00017 0.429
LIG_SH2_SRC 172 175 PF00017 0.429
LIG_SH2_STAP1 292 296 PF00017 0.427
LIG_SH2_STAT5 162 165 PF00017 0.425
LIG_SH2_STAT5 212 215 PF00017 0.433
LIG_SH2_STAT5 295 298 PF00017 0.364
LIG_SH3_1 248 254 PF00018 0.429
LIG_SH3_3 248 254 PF00018 0.429
LIG_UBA3_1 228 233 PF00899 0.421
LIG_UBA3_1 359 368 PF00899 0.424
MOD_CDK_SPxxK_3 182 189 PF00069 0.520
MOD_CK1_1 216 222 PF00069 0.440
MOD_CK1_1 232 238 PF00069 0.435
MOD_CK1_1 319 325 PF00069 0.656
MOD_CK1_1 327 333 PF00069 0.521
MOD_CK2_1 43 49 PF00069 0.527
MOD_GlcNHglycan 13 16 PF01048 0.564
MOD_GlcNHglycan 175 178 PF01048 0.229
MOD_GlcNHglycan 311 314 PF01048 0.740
MOD_GlcNHglycan 321 324 PF01048 0.624
MOD_GlcNHglycan 57 60 PF01048 0.608
MOD_GlcNHglycan 66 69 PF01048 0.478
MOD_GSK3_1 105 112 PF00069 0.429
MOD_GSK3_1 139 146 PF00069 0.464
MOD_GSK3_1 26 33 PF00069 0.576
MOD_GSK3_1 277 284 PF00069 0.429
MOD_GSK3_1 315 322 PF00069 0.646
MOD_GSK3_1 55 62 PF00069 0.608
MOD_N-GLC_1 109 114 PF02516 0.234
MOD_NEK2_1 115 120 PF00069 0.460
MOD_NEK2_1 229 234 PF00069 0.439
MOD_NEK2_1 269 274 PF00069 0.481
MOD_NEK2_1 317 322 PF00069 0.619
MOD_NEK2_1 337 342 PF00069 0.261
MOD_NEK2_1 34 39 PF00069 0.613
MOD_PIKK_1 216 222 PF00454 0.440
MOD_PIKK_1 62 68 PF00454 0.544
MOD_PK_1 277 283 PF00069 0.429
MOD_PKA_1 276 282 PF00069 0.429
MOD_PKA_1 43 49 PF00069 0.634
MOD_PKA_1 54 60 PF00069 0.647
MOD_PKA_2 213 219 PF00069 0.429
MOD_PKA_2 223 229 PF00069 0.429
MOD_PKA_2 43 49 PF00069 0.728
MOD_PKA_2 54 60 PF00069 0.516
MOD_Plk_1 242 248 PF00069 0.429
MOD_Plk_4 242 248 PF00069 0.429
MOD_Plk_4 277 283 PF00069 0.429
MOD_Plk_4 337 343 PF00069 0.299
MOD_Plk_4 358 364 PF00069 0.422
MOD_ProDKin_1 139 145 PF00069 0.429
MOD_ProDKin_1 182 188 PF00069 0.520
MOD_ProDKin_1 35 41 PF00069 0.664
MOD_SUMO_for_1 240 243 PF00179 0.429
MOD_SUMO_rev_2 244 254 PF00179 0.429
TRG_DiLeu_BaEn_1 262 267 PF01217 0.429
TRG_ENDOCYTIC_2 212 215 PF00928 0.433
TRG_ENDOCYTIC_2 298 301 PF00928 0.399
TRG_ER_diArg_1 350 353 PF00400 0.375
TRG_NLS_MonoExtC_3 272 277 PF00514 0.429
TRG_Pf-PMV_PEXEL_1 335 339 PF00026 0.361
TRG_Pf-PMV_PEXEL_1 352 356 PF00026 0.304

Homologs

Protein Taxonomy Sequence identity Coverage
A0A0N1IB33 Leptomonas seymouri 88% 100%
A0A0S4JJ91 Bodo saltans 68% 100%
A0A1X0P2H9 Trypanosomatidae 73% 100%
A0A3S7X2X5 Leishmania donovani 100% 100%
A0A422N140 Trypanosoma rangeli 72% 100%
A2RCH2 Streptococcus pyogenes serotype M5 (strain Manfredo) 29% 100%
A3CQN5 Streptococcus sanguinis (strain SK36) 33% 100%
A4HHW5 Leishmania braziliensis 89% 98%
B1AJP2 Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) 32% 100%
B1HS82 Lysinibacillus sphaericus (strain C3-41) 30% 100%
B1KRY8 Clostridium botulinum (strain Loch Maree / Type A3) 32% 100%
B2AH89 Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1) 31% 100%
B2SX63 Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) 30% 100%
B4RBS4 Phenylobacterium zucineum (strain HLK1) 34% 100%
B4U0U9 Streptococcus equi subsp. zooepidemicus (strain MGCS10565) 29% 100%
B5ZCB6 Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) 30% 100%
C0M8P2 Streptococcus equi subsp. equi (strain 4047) 29% 100%
C0MF36 Streptococcus equi subsp. zooepidemicus (strain H70) 29% 100%
C1AXY5 Rhodococcus opacus (strain B4) 28% 100%
C1CMT3 Streptococcus pneumoniae (strain P1031) 31% 100%
C3KXY4 Clostridium botulinum (strain 657 / Type Ba4) 32% 100%
C9ZQH0 Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) 72% 98%
E9B0E5 Leishmania mexicana (strain MHOM/GT/2001/U1103) 97% 100%
G0SEH7 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 45% 97%
O22268 Arabidopsis thaliana 45% 100%
P41819 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 42% 100%
P78697 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) 46% 100%
Q03IR2 Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) 28% 100%
Q09522 Caenorhabditis elegans 46% 100%
Q0KEA7 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) 31% 100%
Q1J8J4 Streptococcus pyogenes serotype M4 (strain MGAS10750) 29% 100%
Q1JDL6 Streptococcus pyogenes serotype M12 (strain MGAS2096) 29% 100%
Q1JIN6 Streptococcus pyogenes serotype M2 (strain MGAS10270) 29% 100%
Q1JNI8 Streptococcus pyogenes serotype M12 (strain MGAS9429) 29% 100%
Q1WV73 Ligilactobacillus salivarius (strain UCC118) 32% 100%
Q223E6 Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) 29% 100%
Q2KHT8 Bos taurus 52% 100%
Q38V22 Latilactobacillus sakei subsp. sakei (strain 23K) 30% 100%
Q475Q1 Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) 32% 100%
Q48VC6 Streptococcus pyogenes serotype M28 (strain MGAS6180) 29% 100%
Q4Q7U7 Leishmania major 96% 100%
Q4QMZ9 Haemophilus influenzae (strain 86-028NP) 28% 100%
Q54QK7 Dictyostelium discoideum 50% 100%
Q5XDX4 Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) 29% 100%
Q65PH9 Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) 31% 100%
Q6BSY5 Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) 44% 100%
Q6C7H6 Yarrowia lipolytica (strain CLIB 122 / E 150) 46% 100%
Q6FKY3 Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) 45% 100%
Q74C12 Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) 31% 100%
Q75C90 Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) 44% 100%
Q7VM33 Haemophilus ducreyi (strain 35000HP / ATCC 700724) 32% 100%
Q8P2N8 Streptococcus pyogenes serotype M18 (strain MGAS8232) 29% 100%
Q95KJ0 Macaca fascicularis 51% 100%
Q9A1I0 Streptococcus pyogenes serotype M1 29% 100%
Q9CHN8 Lactococcus lactis subsp. lactis (strain IL1403) 30% 100%
Q9CLL5 Pasteurella multocida (strain Pm70) 28% 100%
Q9D0D4 Mus musculus 51% 100%
Q9FK02 Arabidopsis thaliana 40% 98%
Q9PPN8 Ureaplasma parvum serovar 3 (strain ATCC 700970) 32% 100%
Q9UNQ2 Homo sapiens 51% 100%
Q9VAQ5 Drosophila melanogaster 50% 100%
V5BCC0 Trypanosoma cruzi 72% 100%

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LeishMANIAdb - Server version: v0.0.2. - Database version: v0.0.1. - ChangeLog - © 2022-2025 Protein Bioinformatics Research Group, Institute of Enzymology, RCNS