DNA topoisomerase type IB small subunit

Quick info Annotations Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

DNA topoisomerase type IB small subunit - putative

Species:

Leishmania infantum

UniProt:

A4HS02_LEIIN

TriTrypDb:

LINF_040005700

Length:

262

Annotations

Annotations by Jardim et al.

Topoisomerase, DNA topoisomerase type IB small subunit

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 6
NetGPI	no	yes: 0, no: 6

Cellular components
Term	Name	Level	Count
GO:0005694	chromosome	5	7
GO:0043226	organelle	2	7
GO:0043228	non-membrane-bounded organelle	3	7
GO:0043229	intracellular organelle	3	7
GO:0043232	intracellular non-membrane-bounded organelle	4	7
GO:0110165	cellular anatomical entity	1	7
GO:0005634	nucleus	5	1
GO:0005730	nucleolus	5	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1

Expansion

Sequence features

A4HS02

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4HS02

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	7
GO:0006259	DNA metabolic process	4	7
GO:0006265	DNA topological change	5	7
GO:0006725	cellular aromatic compound metabolic process	3	7
GO:0006807	nitrogen compound metabolic process	2	7
GO:0006996	organelle organization	4	7
GO:0008152	metabolic process	1	7
GO:0009987	cellular process	1	7
GO:0016043	cellular component organization	3	7
GO:0034641	cellular nitrogen compound metabolic process	3	7
GO:0043170	macromolecule metabolic process	3	7
GO:0044237	cellular metabolic process	2	7
GO:0044238	primary metabolic process	2	7
GO:0044260	obsolete cellular macromolecule metabolic process	3	7
GO:0046483	heterocycle metabolic process	3	7
GO:0051276	chromosome organization	5	7
GO:0071103	DNA conformation change	6	7
GO:0071704	organic substance metabolic process	2	7
GO:0071840	cellular component organization or biogenesis	2	7
GO:0090304	nucleic acid metabolic process	4	7
GO:1901360	organic cyclic compound metabolic process	3	7
GO:0006260	DNA replication	5	1
GO:0007059	chromosome segregation	2	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	7
GO:0003677	DNA binding	4	7
GO:0003824	catalytic activity	1	7
GO:0003916	DNA topoisomerase activity	3	7
GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	4	7
GO:0005488	binding	1	7
GO:0016853	isomerase activity	2	7
GO:0097159	organic cyclic compound binding	2	7
GO:0140097	catalytic activity, acting on DNA	3	7
GO:0140640	catalytic activity, acting on a nucleic acid	2	7
GO:1901363	heterocyclic compound binding	2	7

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	100	104	PF00656	0.587
CLV_C14_Caspase3-7	119	123	PF00656	0.623
CLV_NRD_NRD_1	92	94	PF00675	0.617
CLV_PCSK_KEX2_1	92	94	PF00082	0.617
CLV_PCSK_SKI1_1	158	162	PF00082	0.537
CLV_PCSK_SKI1_1	66	70	PF00082	0.656
DEG_COP1_1	164	171	PF00400	0.596
DEG_Nend_UBRbox_3	1	3	PF02207	0.600
DEG_SPOP_SBC_1	94	98	PF00917	0.612
DOC_CYCLIN_yCln2_LP_2	171	174	PF00134	0.647
DOC_MAPK_gen_1	196	206	PF00069	0.421
DOC_MAPK_gen_1	20	26	PF00069	0.517
DOC_PP2B_LxvP_1	171	174	PF13499	0.647
DOC_USP7_UBL2_3	207	211	PF12436	0.324
DOC_WW_Pin1_4	19	24	PF00397	0.569
DOC_WW_Pin1_4	3	8	PF00397	0.675
LIG_14-3-3_CanoR_1	131	140	PF00244	0.605
LIG_14-3-3_CanoR_1	226	232	PF00244	0.421
LIG_14-3-3_CanoR_1	38	42	PF00244	0.577
LIG_FHA_1	215	221	PF00498	0.324
LIG_FHA_2	20	26	PF00498	0.635
LIG_MYND_1	169	173	PF01753	0.663
LIG_PDZ_Class_2	257	262	PF00595	0.324
LIG_SH2_PTP2	222	225	PF00017	0.324
LIG_SH2_SRC	222	225	PF00017	0.324
LIG_SH2_STAT5	222	225	PF00017	0.324
LIG_SH3_3	1	7	PF00018	0.639
LIG_SH3_3	170	176	PF00018	0.550
LIG_SH3_3	75	81	PF00018	0.557
LIG_SH3_3	9	15	PF00018	0.565
LIG_SUMO_SIM_par_1	22	27	PF11976	0.570
LIG_TRAF2_1	162	165	PF00917	0.589
LIG_UBA3_1	203	211	PF00899	0.303
LIG_UBA3_1	62	69	PF00899	0.571
LIG_WW_3	172	176	PF00397	0.537
MOD_CK1_1	104	110	PF00069	0.657
MOD_CK1_1	115	121	PF00069	0.616
MOD_CK1_1	124	130	PF00069	0.598
MOD_CK1_1	132	138	PF00069	0.627
MOD_CK1_1	214	220	PF00069	0.324
MOD_CK1_1	96	102	PF00069	0.712
MOD_CK2_1	131	137	PF00069	0.636
MOD_GlcNHglycan	116	121	PF01048	0.567
MOD_GlcNHglycan	134	137	PF01048	0.653
MOD_GlcNHglycan	140	143	PF01048	0.587
MOD_GlcNHglycan	243	246	PF01048	0.438
MOD_GlcNHglycan	25	29	PF01048	0.517
MOD_GlcNHglycan	33	36	PF01048	0.447
MOD_GSK3_1	101	108	PF00069	0.703
MOD_GSK3_1	111	118	PF00069	0.542
MOD_GSK3_1	120	127	PF00069	0.661
MOD_GSK3_1	131	138	PF00069	0.702
MOD_GSK3_1	211	218	PF00069	0.324
MOD_GSK3_1	33	40	PF00069	0.484
MOD_GSK3_1	67	74	PF00069	0.497
MOD_GSK3_1	93	100	PF00069	0.639
MOD_NEK2_1	215	220	PF00069	0.324
MOD_NEK2_1	243	248	PF00069	0.329
MOD_NEK2_1	31	36	PF00069	0.381
MOD_NEK2_2	142	147	PF00069	0.538
MOD_PIKK_1	149	155	PF00454	0.486
MOD_PKA_2	130	136	PF00069	0.621
MOD_PKA_2	37	43	PF00069	0.667
MOD_Plk_1	121	127	PF00069	0.723
MOD_Plk_1	142	148	PF00069	0.477
MOD_Plk_1	24	30	PF00069	0.545
MOD_Plk_2-3	112	118	PF00069	0.685
MOD_Plk_4	135	141	PF00069	0.641
MOD_Plk_4	142	148	PF00069	0.478
MOD_Plk_4	167	173	PF00069	0.665
MOD_Plk_4	67	73	PF00069	0.581
MOD_ProDKin_1	19	25	PF00069	0.566
MOD_ProDKin_1	3	9	PF00069	0.673
MOD_SUMO_rev_2	208	213	PF00179	0.324
TRG_DiLeu_BaEn_1	167	172	PF01217	0.618
TRG_ER_diArg_1	91	93	PF00400	0.617

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1IID6	Leptomonas seymouri	62%	100%
A0A451EJV3	Leishmania donovani	99%	100%
A4H3S7	Leishmania braziliensis	78%	100%
E9AJZ0	Leishmania mexicana (strain MHOM/GT/2001/U1103)	94%	100%
Q95Z89	Leishmania major	95%	100%