SWIM-type domain-containing protein

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

hypothetical protein, conserved

Species:

Leishmania braziliensis

UniProt:

A4HQ79_LEIBR

TriTrypDb:

LbrM.35.5910 , LBRM2903_350070400

Length:

235

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

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Cellular components
Term	Name	Level	Count
GO:0032991	protein-containing complex	1	1
GO:0097196	Shu complex	2	1

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Expansion

Sequence features

A4HQ79

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4HQ79

Function

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Biological processes
Term	Name	Level	Count
GO:0000724	double-strand break repair via homologous recombination	7	1
GO:0000725	recombinational repair	6	1
GO:0006139	nucleobase-containing compound metabolic process	3	1
GO:0006259	DNA metabolic process	4	1
GO:0006281	DNA repair	5	1
GO:0006302	double-strand break repair	6	1
GO:0006310	DNA recombination	5	1
GO:0006725	cellular aromatic compound metabolic process	3	1
GO:0006807	nitrogen compound metabolic process	2	1
GO:0006950	response to stress	2	1

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Molecular functions
Term	Name	Level	Count
GO:0005488	binding	1	4
GO:0008270	zinc ion binding	6	4
GO:0043167	ion binding	2	4
GO:0043169	cation binding	3	4
GO:0046872	metal ion binding	4	4
GO:0046914	transition metal ion binding	5	4

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Putative motif mimicry

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Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	120	122	PF00675	0.699
CLV_PCSK_FUR_1	118	122	PF00082	0.679
CLV_PCSK_KEX2_1	120	122	PF00082	0.739
CLV_PCSK_SKI1_1	193	197	PF00082	0.371
CLV_PCSK_SKI1_1	21	25	PF00082	0.548
CLV_PCSK_SKI1_1	68	72	PF00082	0.429
DEG_Nend_UBRbox_2	1	3	PF02207	0.512
DEG_SPOP_SBC_1	126	130	PF00917	0.751
DOC_MAPK_MEF2A_6	193	202	PF00069	0.353
DOC_MAPK_NFAT4_5	193	201	PF00069	0.355

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Homologs

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Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I274	Leptomonas seymouri	53%	95%
A0A0S4J7F5	Bodo saltans	30%	95%
A0A1X0P068	Trypanosomatidae	34%	100%
A0A3R7L646	Trypanosoma rangeli	37%	100%
A0A3S7XBY1	Leishmania donovani	68%	100%
A4IDX7	Leishmania infantum	69%	100%
D0A433	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	30%	100%
E9ATZ7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	69%	100%
Q4Q0J8	Leishmania major	69%	100%
V5BTC7	Trypanosoma cruzi	37%	100%

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