Paraflagellar rod protein 1D

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

paraflagellar rod protein 1D

Species:

Leishmania braziliensis

UniProt:

A4HIY0_LEIBR

TriTrypDb:

LbrM.31.0160 , LBRM2903_310005800

Length:

595

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 8
Forrest at al. (procyclic)	no	yes: 8
Silverman et al.	no	yes: 2
Pissara et al.	yes	yes: 28

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 8

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 24

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 46
NetGPI	no	yes: 0, no: 46

Cellular components
Term	Name	Level	Count
GO:0005929	cilium	4	47
GO:0031514	motile cilium	5	47
GO:0042995	cell projection	2	47
GO:0043226	organelle	2	47
GO:0043227	membrane-bounded organelle	3	47
GO:0110165	cellular anatomical entity	1	47
GO:0120025	plasma membrane bounded cell projection	3	47
GO:0005737	cytoplasm	2	3
GO:0031974	membrane-enclosed lumen	2	3
GO:0031981	nuclear lumen	5	3
GO:0032838	plasma membrane bounded cell projection cytoplasm	4	3
GO:0043233	organelle lumen	3	3
GO:0070013	intracellular organelle lumen	4	3
GO:0097014	ciliary plasm	5	3
GO:0099568	cytoplasmic region	3	3
GO:0005930	axoneme	2	1

Expansion

Sequence features

A4HIY0

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4HIY0

Function

Could not find GO biological_process term for this entry.

Molecular functions
Term	Name	Level	Count
GO:0005488	binding	1	47
GO:0005515	protein binding	2	47
GO:0005516	calmodulin binding	3	47

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	149	153	PF00656	0.494
CLV_C14_Caspase3-7	512	516	PF00656	0.390
CLV_NRD_NRD_1	13	15	PF00675	0.595
CLV_NRD_NRD_1	147	149	PF00675	0.476
CLV_NRD_NRD_1	270	272	PF00675	0.385
CLV_NRD_NRD_1	346	348	PF00675	0.392
CLV_NRD_NRD_1	357	359	PF00675	0.372
CLV_NRD_NRD_1	535	537	PF00675	0.376
CLV_PCSK_KEX2_1	147	149	PF00082	0.476
CLV_PCSK_KEX2_1	269	271	PF00082	0.354
CLV_PCSK_KEX2_1	299	301	PF00082	0.384
CLV_PCSK_KEX2_1	345	347	PF00082	0.385
CLV_PCSK_KEX2_1	356	358	PF00082	0.401
CLV_PCSK_KEX2_1	445	447	PF00082	0.390
CLV_PCSK_KEX2_1	535	537	PF00082	0.389
CLV_PCSK_KEX2_1	562	564	PF00082	0.574
CLV_PCSK_PC1ET2_1	269	271	PF00082	0.359
CLV_PCSK_PC1ET2_1	299	301	PF00082	0.390
CLV_PCSK_PC1ET2_1	345	347	PF00082	0.388
CLV_PCSK_PC1ET2_1	356	358	PF00082	0.402
CLV_PCSK_PC1ET2_1	445	447	PF00082	0.389
CLV_PCSK_PC1ET2_1	562	564	PF00082	0.571
CLV_PCSK_PC7_1	353	359	PF00082	0.410
CLV_PCSK_PC7_1	558	564	PF00082	0.568
CLV_PCSK_SKI1_1	110	114	PF00082	0.480
CLV_PCSK_SKI1_1	162	166	PF00082	0.483
CLV_PCSK_SKI1_1	266	270	PF00082	0.371
CLV_PCSK_SKI1_1	310	314	PF00082	0.491
CLV_PCSK_SKI1_1	372	376	PF00082	0.393
DEG_APCC_KENBOX_2	312	316	PF00400	0.513
DOC_CYCLIN_RxL_1	369	378	PF00134	0.395
DOC_CYCLIN_RxL_1	425	438	PF00134	0.368
DOC_MAPK_gen_1	120	128	PF00069	0.519
DOC_MAPK_gen_1	14	23	PF00069	0.578
DOC_MAPK_gen_1	372	379	PF00069	0.390
DOC_MAPK_gen_1	452	461	PF00069	0.385
DOC_MAPK_MEF2A_6	372	379	PF00069	0.390
DOC_MAPK_MEF2A_6	455	463	PF00069	0.395
DOC_MAPK_NFAT4_5	372	380	PF00069	0.395
DOC_PP1_RVXF_1	122	129	PF00149	0.484
DOC_PP4_FxxP_1	521	524	PF00568	0.385
DOC_USP7_MATH_1	179	183	PF00917	0.506
DOC_USP7_UBL2_3	269	273	PF12436	0.357
DOC_USP7_UBL2_3	480	484	PF12436	0.370
LIG_14-3-3_CanoR_1	124	129	PF00244	0.496
LIG_Actin_WH2_2	132	149	PF00022	0.490
LIG_APCC_ABBA_1	419	424	PF00400	0.395
LIG_APCC_ABBAyCdc20_2	418	424	PF00400	0.395
LIG_BIR_III_4	515	519	PF00653	0.390
LIG_BIR_III_4	6	10	PF00653	0.721
LIG_CtBP_PxDLS_1	86	92	PF00389	0.540
LIG_DLG_GKlike_1	124	131	PF00625	0.600
LIG_eIF4E_1	76	82	PF01652	0.497
LIG_FHA_1	121	127	PF00498	0.533
LIG_FHA_1	159	165	PF00498	0.482
LIG_FHA_1	171	177	PF00498	0.490
LIG_FHA_1	195	201	PF00498	0.506
LIG_FHA_1	23	29	PF00498	0.547
LIG_FHA_1	387	393	PF00498	0.386
LIG_FHA_2	408	414	PF00498	0.365
LIG_FHA_2	545	551	PF00498	0.580
LIG_FHA_2	6	12	PF00498	0.627
LIG_IRF3_LxIS_1	33	40	PF10401	0.685
LIG_LIR_Apic_2	520	524	PF02991	0.378
LIG_LIR_Gen_1	127	136	PF02991	0.483
LIG_LIR_Gen_1	215	223	PF02991	0.463
LIG_LIR_Gen_1	320	329	PF02991	0.364
LIG_LIR_Gen_1	338	348	PF02991	0.394
LIG_LIR_Gen_1	68	78	PF02991	0.652
LIG_LIR_Nem_3	127	131	PF02991	0.601
LIG_LIR_Nem_3	215	221	PF02991	0.462
LIG_LIR_Nem_3	233	238	PF02991	0.440
LIG_LIR_Nem_3	246	251	PF02991	0.505
LIG_LIR_Nem_3	320	326	PF02991	0.379
LIG_LIR_Nem_3	338	344	PF02991	0.396
LIG_LIR_Nem_3	427	432	PF02991	0.374
LIG_NRBOX	226	232	PF00104	0.577
LIG_PCNA_yPIPBox_3	220	231	PF02747	0.441
LIG_PDZ_Class_2	590	595	PF00595	0.772
LIG_PTB_Apo_2	358	365	PF02174	0.513
LIG_SH2_STAT3	252	255	PF00017	0.558
LIG_SH2_STAT5	301	304	PF00017	0.308
LIG_SH2_STAT5	428	431	PF00017	0.369
LIG_SH2_STAT5	433	436	PF00017	0.356
LIG_SUMO_SIM_par_1	373	378	PF11976	0.395
LIG_TRAF2_1	258	261	PF00917	0.524
LIG_TRAF2_1	547	550	PF00917	0.562
LIG_UBA3_1	227	234	PF00899	0.444
LIG_WRC_WIRS_1	125	130	PF05994	0.502
LIG_WRC_WIRS_1	465	470	PF05994	0.370
MOD_CK1_1	40	46	PF00069	0.584
MOD_CK1_1	402	408	PF00069	0.336
MOD_CK1_1	544	550	PF00069	0.571
MOD_CK2_1	5	11	PF00069	0.660
MOD_CK2_1	544	550	PF00069	0.516
MOD_CK2_1	566	572	PF00069	0.694
MOD_CK2_1	87	93	PF00069	0.529
MOD_GlcNHglycan	568	571	PF01048	0.628
MOD_GlcNHglycan	572	575	PF01048	0.641
MOD_GlcNHglycan	579	582	PF01048	0.668
MOD_GSK3_1	120	127	PF00069	0.532
MOD_GSK3_1	295	302	PF00069	0.332
MOD_GSK3_1	566	573	PF00069	0.672
MOD_N-GLC_1	120	125	PF02516	0.542
MOD_N-GLC_1	171	176	PF02516	0.505
MOD_NEK2_1	146	151	PF00069	0.501
MOD_NEK2_1	171	176	PF00069	0.511
MOD_NEK2_1	375	380	PF00069	0.378
MOD_NEK2_1	386	391	PF00069	0.373
MOD_NEK2_1	432	437	PF00069	0.376
MOD_NEK2_1	566	571	PF00069	0.627
MOD_NEK2_1	87	92	PF00069	0.526
MOD_NEK2_2	160	165	PF00069	0.516
MOD_NEK2_2	399	404	PF00069	0.396
MOD_PIKK_1	126	132	PF00454	0.498
MOD_PIKK_1	146	152	PF00454	0.521
MOD_PIKK_1	171	177	PF00454	0.527
MOD_PIKK_1	186	192	PF00454	0.521
MOD_PIKK_1	243	249	PF00454	0.558
MOD_PIKK_1	260	266	PF00454	0.394
MOD_PIKK_1	42	48	PF00454	0.601
MOD_PIKK_1	87	93	PF00454	0.518
MOD_PKA_1	299	305	PF00069	0.221
MOD_PKA_2	146	152	PF00069	0.511
MOD_PKA_2	299	305	PF00069	0.431
MOD_PKA_2	386	392	PF00069	0.413
MOD_PKA_2	534	540	PF00069	0.379
MOD_Plk_1	120	126	PF00069	0.519
MOD_Plk_1	132	138	PF00069	0.414
MOD_Plk_1	151	157	PF00069	0.467
MOD_Plk_1	171	177	PF00069	0.522
MOD_Plk_1	243	249	PF00069	0.560
MOD_Plk_1	260	266	PF00069	0.342
MOD_Plk_1	319	325	PF00069	0.351
MOD_Plk_1	375	381	PF00069	0.407
MOD_Plk_4	375	381	PF00069	0.393
MOD_Plk_4	435	441	PF00069	0.390
MOD_SUMO_for_1	137	140	PF00179	0.512
MOD_SUMO_for_1	478	481	PF00179	0.399
MOD_SUMO_rev_2	277	283	PF00179	0.363
MOD_SUMO_rev_2	505	510	PF00179	0.376
MOD_SUMO_rev_2	537	544	PF00179	0.414
MOD_SUMO_rev_2	557	564	PF00179	0.602
MOD_SUMO_rev_2	93	101	PF00179	0.542
TRG_DiLeu_BaEn_1	29	34	PF01217	0.557
TRG_DiLeu_BaEn_2	359	365	PF01217	0.395
TRG_DiLeu_BaEn_3	490	496	PF01217	0.396
TRG_DiLeu_BaEn_4	491	497	PF01217	0.382
TRG_DiLeu_BaLyEn_6	223	228	PF01217	0.465
TRG_DiLeu_BaLyEn_6	562	567	PF01217	0.602
TRG_ENDOCYTIC_2	428	431	PF00928	0.383
TRG_ENDOCYTIC_2	433	436	PF00928	0.375
TRG_ER_diArg_1	146	148	PF00400	0.475
TRG_ER_diArg_1	270	272	PF00400	0.377
TRG_ER_diArg_1	346	348	PF00400	0.383
TRG_ER_diArg_1	357	359	PF00400	0.389
TRG_ER_diArg_1	563	566	PF00400	0.561
TRG_NLS_MonoExtC_3	268	273	PF00514	0.395
TRG_NLS_MonoExtN_4	266	273	PF00514	0.395
TRG_Pf-PMV_PEXEL_1	270	274	PF00026	0.359
TRG_Pf-PMV_PEXEL_1	310	314	PF00026	0.377
TRG_Pf-PMV_PEXEL_1	346	350	PF00026	0.377
TRG_Pf-PMV_PEXEL_1	372	376	PF00026	0.387
TRG_Pf-PMV_PEXEL_1	445	449	PF00026	0.386

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P2I5	Leptomonas seymouri	96%	100%
A0A0N0P5J5	Leptomonas seymouri	24%	75%
A0A0N1IFZ5	Leptomonas seymouri	65%	100%
A0A0S4IW44	Bodo saltans	29%	90%
A0A0S4IZY8	Bodo saltans	67%	100%
A0A0S4J013	Bodo saltans	29%	91%
A0A0S4J193	Bodo saltans	26%	96%
A0A0S4J561	Bodo saltans	28%	84%
A0A0S4JS20	Bodo saltans	86%	100%
A0A1X0NR57	Trypanosomatidae	24%	75%
A0A1X0NYU4	Trypanosomatidae	66%	99%
A0A1X0P0B7	Trypanosomatidae	87%	100%
A0A381MH18	Leishmania infantum	66%	99%
A0A381MN58	Leishmania infantum	97%	100%
A0A3Q8IAP5	Leishmania donovani	66%	99%
A0A3Q8IEH2	Leishmania donovani	97%	100%
A0A3R7KDB9	Trypanosoma rangeli	66%	99%
A0A3S5IRI8	Trypanosoma rangeli	86%	100%
A0A3S7WQV4	Leishmania donovani	21%	98%
A0A3S7X0V5	Leishmania donovani	25%	76%
A0A3S7X2K1	Leishmania donovani	97%	100%
A0A422NJR9	Trypanosoma rangeli	23%	80%
A4H8S1	Leishmania braziliensis	66%	100%
A4HFV9	Leishmania braziliensis	25%	100%
A4HU55	Leishmania infantum	21%	98%
A4HX40	Leishmania infantum	64%	100%
A4I2Z1	Leishmania infantum	25%	76%
C9ZJD8	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	24%	78%
C9ZLC1	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	86%	100%
C9ZLC2	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	86%	100%
C9ZU76	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	27%	86%
C9ZVV0	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	66%	99%
E9ADG3	Leishmania major	25%	76%
E9AE36	Leishmania major	97%	100%
E9AE37	Leishmania major	97%	100%
E9AHJ2	Leishmania infantum	97%	100%
E9ALP7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
E9ALP8	Leishmania mexicana (strain MHOM/GT/2001/U1103)	96%	100%
E9AMY4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	22%	98%
E9AQV6	Leishmania mexicana (strain MHOM/GT/2001/U1103)	65%	89%
E9AZ87	Leishmania mexicana (strain MHOM/GT/2001/U1103)	25%	76%
P22225	Trypanosoma brucei brucei	66%	99%
Q26789	Trypanosoma brucei brucei	85%	100%
Q4QEM2	Leishmania major	66%	100%
Q4QHP3	Leishmania major	22%	100%
V5BDW8	Trypanosoma cruzi	86%	100%
V5BIN9	Trypanosoma cruzi	24%	80%