LeishMANIAdb
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rRNA adenine N(6)-methyltransferase

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:
rRNA adenine N(6)-methyltransferase
Gene product:
ribosomal RNA adenine dimethylase family protein, putative
Species:
Leishmania braziliensis
UniProt:
A4HHW5_LEIBR
TriTrypDb:
LbrM.30.0220 , LBRM2903_300007800
Length:
366

Localization

Secreted promastigote
Source Evidence on protein Close homologs
Cuervo et al. no yes: 0
Hassani et al. no yes: 0
Forrest at al. (metacyclic) no yes: 0
Forrest at al. (procyclic) no yes: 0
Silverman et al. no yes: 0
Pissara et al. no yes: 0
Secreted amastigote
Source Evidence on protein Close homologs
Pires et al. no yes: 0
Exosome
Source Evidence on protein Close homologs
Silverman et al. no yes: 0
Glycosome
Source Evidence on protein Close homologs
Jamdhade et al. no yes: 9
Predictions
Source Evidence on protein Close homologs
DeepLoc
SignalP6 no yes: 0, no: 11
NetGPI no yes: 0, no: 11
Cellular components
Term Name Level Count
GO:0005730 nucleolus 5 1
GO:0043226 organelle 2 1
GO:0043228 non-membrane-bounded organelle 3 1
GO:0043229 intracellular organelle 3 1
GO:0043232 intracellular non-membrane-bounded organelle 4 1
GO:0110165 cellular anatomical entity 1 2
GO:0016020 membrane 2 1

Expansion

Sequence features

A4HHW5
Sequence
MSA
Disorder
Secondary
Topology
Domains
SignalP
GPI
Phosphorylations
ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A4HHW5

Function

Biological processes
Term Name Level Count
GO:0000154 rRNA modification 6 1
GO:0001510 RNA methylation 4 1
GO:0006139 nucleobase-containing compound metabolic process 3 1
GO:0006364 rRNA processing 8 1
GO:0006396 RNA processing 6 1
GO:0006725 cellular aromatic compound metabolic process 3 1
GO:0006807 nitrogen compound metabolic process 2 1
GO:0008152 metabolic process 1 1
GO:0009451 RNA modification 5 1
GO:0009987 cellular process 1 1
GO:0016070 RNA metabolic process 5 1
GO:0016072 rRNA metabolic process 7 1
GO:0031167 rRNA methylation 5 1
GO:0032259 methylation 2 1
GO:0034470 ncRNA processing 7 1
GO:0034641 cellular nitrogen compound metabolic process 3 1
GO:0034660 ncRNA metabolic process 6 1
GO:0043170 macromolecule metabolic process 3 1
GO:0043412 macromolecule modification 4 1
GO:0043414 macromolecule methylation 3 1
GO:0044237 cellular metabolic process 2 1
GO:0044238 primary metabolic process 2 1
GO:0044260 obsolete cellular macromolecule metabolic process 3 1
GO:0046483 heterocycle metabolic process 3 1
GO:0071704 organic substance metabolic process 2 1
GO:0090304 nucleic acid metabolic process 4 1
GO:1901360 organic cyclic compound metabolic process 3 1
Molecular functions
Term Name Level Count
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 6 12
GO:0003676 nucleic acid binding 3 12
GO:0003723 RNA binding 4 12
GO:0003824 catalytic activity 1 12
GO:0005488 binding 1 12
GO:0008168 methyltransferase activity 4 12
GO:0008170 N-methyltransferase activity 5 12
GO:0008173 RNA methyltransferase activity 4 12
GO:0008649 rRNA methyltransferase activity 5 12
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 5 12
GO:0016433 rRNA (adenine) methyltransferase activity 6 12
GO:0016740 transferase activity 2 12
GO:0016741 transferase activity, transferring one-carbon groups 3 12
GO:0097159 organic cyclic compound binding 2 12
GO:0140098 catalytic activity, acting on RNA 3 12
GO:0140102 catalytic activity, acting on a rRNA 4 12
GO:0140640 catalytic activity, acting on a nucleic acid 2 12
GO:1901363 heterocyclic compound binding 2 12

Putative motif mimicry

Leishmania From To Domain/Motif Score
CLV_C14_Caspase3-7 313 317 PF00656 0.682
CLV_NRD_NRD_1 22 24 PF00675 0.647
CLV_NRD_NRD_1 271 273 PF00675 0.249
CLV_NRD_NRD_1 298 300 PF00675 0.551
CLV_NRD_NRD_1 43 45 PF00675 0.683
CLV_PCSK_KEX2_1 136 138 PF00082 0.269
CLV_PCSK_KEX2_1 298 300 PF00082 0.324
CLV_PCSK_KEX2_1 43 45 PF00082 0.782
CLV_PCSK_PC1ET2_1 136 138 PF00082 0.269
CLV_PCSK_SKI1_1 180 184 PF00082 0.273
CLV_PCSK_SKI1_1 23 27 PF00082 0.579
CLV_PCSK_SKI1_1 267 271 PF00082 0.249
CLV_PCSK_SKI1_1 30 34 PF00082 0.610
CLV_PCSK_SKI1_1 327 331 PF00082 0.282
DEG_APCC_DBOX_1 326 334 PF00400 0.439
DEG_SPOP_SBC_1 309 313 PF00917 0.596
DOC_CKS1_1 139 144 PF01111 0.473
DOC_CKS1_1 182 187 PF01111 0.554
DOC_CYCLIN_RxL_1 324 332 PF00134 0.434
DOC_CYCLIN_yCln2_LP_2 79 85 PF00134 0.449
DOC_MAPK_DCC_7 251 259 PF00069 0.464
DOC_MAPK_gen_1 3 12 PF00069 0.572
DOC_MAPK_MEF2A_6 251 259 PF00069 0.449
DOC_MAPK_MEF2A_6 95 103 PF00069 0.449
DOC_MAPK_RevD_3 285 299 PF00069 0.571
DOC_PP1_RVXF_1 118 125 PF00149 0.449
DOC_PP1_RVXF_1 21 28 PF00149 0.566
DOC_PP4_FxxP_1 235 238 PF00568 0.449
DOC_USP7_MATH_1 142 146 PF00917 0.489
DOC_USP7_MATH_1 172 176 PF00917 0.449
DOC_USP7_MATH_1 222 226 PF00917 0.460
DOC_USP7_MATH_1 305 309 PF00917 0.624
DOC_USP7_MATH_1 310 314 PF00917 0.636
DOC_USP7_MATH_1 61 65 PF00917 0.471
DOC_USP7_UBL2_3 26 30 PF12436 0.635
DOC_USP7_UBL2_3 91 95 PF12436 0.449
DOC_WW_Pin1_4 138 143 PF00397 0.449
DOC_WW_Pin1_4 181 186 PF00397 0.554
DOC_WW_Pin1_4 316 321 PF00397 0.522
DOC_WW_Pin1_4 35 40 PF00397 0.715
LIG_14-3-3_CanoR_1 213 217 PF00244 0.447
LIG_14-3-3_CanoR_1 223 230 PF00244 0.449
LIG_14-3-3_CanoR_1 232 236 PF00244 0.449
LIG_BRCT_BRCA1_1 277 281 PF00533 0.449
LIG_FHA_1 105 111 PF00498 0.439
LIG_FHA_1 27 33 PF00498 0.669
LIG_FHA_1 95 101 PF00498 0.439
LIG_LIR_Apic_2 234 238 PF02991 0.449
LIG_LIR_Gen_1 208 216 PF02991 0.444
LIG_LIR_Nem_3 156 162 PF02991 0.449
LIG_LIR_Nem_3 208 214 PF02991 0.444
LIG_LIR_Nem_3 260 265 PF02991 0.449
LIG_LIR_Nem_3 292 297 PF02991 0.383
LIG_LIR_Nem_3 324 329 PF02991 0.397
LIG_Pex14_2 194 198 PF04695 0.449
LIG_Pex14_2 70 74 PF04695 0.460
LIG_PTB_Apo_2 165 172 PF02174 0.449
LIG_PTB_Apo_2 68 75 PF02174 0.317
LIG_PTB_Phospho_1 165 171 PF10480 0.449
LIG_Rb_pABgroove_1 285 293 PF01858 0.532
LIG_SH2_CRK 211 215 PF00017 0.449
LIG_SH2_SRC 171 174 PF00017 0.449
LIG_SH2_STAP1 291 295 PF00017 0.441
LIG_SH2_STAT5 161 164 PF00017 0.438
LIG_SH2_STAT5 211 214 PF00017 0.449
LIG_SH2_STAT5 294 297 PF00017 0.384
LIG_SH3_1 247 253 PF00018 0.449
LIG_SH3_3 247 253 PF00018 0.449
LIG_UBA3_1 351 360 PF00899 0.420
MOD_CDK_SPxxK_3 181 188 PF00069 0.554
MOD_CK1_1 215 221 PF00069 0.457
MOD_CK1_1 231 237 PF00069 0.417
MOD_CK1_1 308 314 PF00069 0.602
MOD_GlcNHglycan 174 177 PF01048 0.249
MOD_GlcNHglycan 301 304 PF01048 0.512
MOD_GlcNHglycan 307 310 PF01048 0.711
MOD_GlcNHglycan 65 68 PF01048 0.506
MOD_GlcNHglycan 90 94 PF01048 0.286
MOD_GSK3_1 104 111 PF00069 0.448
MOD_GSK3_1 138 145 PF00069 0.466
MOD_GSK3_1 26 33 PF00069 0.599
MOD_GSK3_1 276 283 PF00069 0.449
MOD_GSK3_1 305 312 PF00069 0.568
MOD_GSK3_1 315 322 PF00069 0.572
MOD_N-GLC_1 108 113 PF02516 0.243
MOD_NEK2_1 114 119 PF00069 0.475
MOD_NEK2_1 228 233 PF00069 0.449
MOD_NEK2_1 329 334 PF00069 0.278
MOD_NEK2_1 338 343 PF00069 0.377
MOD_NEK2_1 34 39 PF00069 0.638
MOD_PIKK_1 215 221 PF00454 0.460
MOD_PIKK_1 61 67 PF00454 0.578
MOD_PK_1 276 282 PF00069 0.449
MOD_PKA_1 275 281 PF00069 0.449
MOD_PKA_2 212 218 PF00069 0.449
MOD_PKA_2 222 228 PF00069 0.449
MOD_PKA_2 231 237 PF00069 0.449
MOD_Plk_1 241 247 PF00069 0.449
MOD_Plk_1 89 95 PF00069 0.427
MOD_Plk_4 241 247 PF00069 0.449
MOD_Plk_4 276 282 PF00069 0.449
MOD_Plk_4 310 316 PF00069 0.450
MOD_Plk_4 329 335 PF00069 0.323
MOD_Plk_4 350 356 PF00069 0.440
MOD_ProDKin_1 138 144 PF00069 0.449
MOD_ProDKin_1 181 187 PF00069 0.554
MOD_ProDKin_1 316 322 PF00069 0.510
MOD_ProDKin_1 35 41 PF00069 0.716
MOD_SUMO_for_1 239 242 PF00179 0.449
MOD_SUMO_rev_2 243 253 PF00179 0.449
TRG_DiLeu_BaEn_1 261 266 PF01217 0.449
TRG_ENDOCYTIC_2 211 214 PF00928 0.441
TRG_ENDOCYTIC_2 297 300 PF00928 0.425
TRG_ER_diArg_1 297 299 PF00400 0.305
TRG_ER_diArg_1 342 345 PF00400 0.401
TRG_NLS_MonoExtC_3 271 276 PF00514 0.449
TRG_Pf-PMV_PEXEL_1 327 331 PF00026 0.389
TRG_Pf-PMV_PEXEL_1 344 348 PF00026 0.329

Homologs

Protein Taxonomy Sequence identity Coverage
A0A0N1IB33 Leptomonas seymouri 86% 98%
A0A0S4JJ91 Bodo saltans 69% 100%
A0A1X0P2H9 Trypanosomatidae 73% 100%
A0A3S7X2X5 Leishmania donovani 88% 98%
A0A422N140 Trypanosoma rangeli 72% 100%
A1VUN7 Polaromonas naphthalenivorans (strain CJ2) 29% 100%
A1WS95 Verminephrobacter eiseniae (strain EF01-2) 29% 100%
A2C1Z5 Prochlorococcus marinus (strain NATL1A) 35% 100%
A3CQN5 Streptococcus sanguinis (strain SK36) 31% 100%
A4I515 Leishmania infantum 89% 98%
A4TQD8 Yersinia pestis (strain Pestoides F) 30% 100%
A7FMC1 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) 31% 100%
A8AUQ4 Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288) 32% 100%
A9QZZ0 Yersinia pestis bv. Antiqua (strain Angola) 30% 100%
B1AJP2 Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) 30% 100%
B1HS82 Lysinibacillus sphaericus (strain C3-41) 30% 100%
B1I8T7 Streptococcus pneumoniae (strain Hungary19A-6) 31% 100%
B1JKY3 Yersinia pseudotuberculosis serotype O:3 (strain YPIII) 31% 100%
B2AH89 Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1) 32% 100%
B2JCX3 Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) 34% 100%
B2K487 Yersinia pseudotuberculosis serotype IB (strain PB1/+) 31% 100%
B5E2H6 Streptococcus pneumoniae serotype 19F (strain G54) 31% 100%
B5ZCB6 Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) 29% 100%
B9DLD0 Staphylococcus carnosus (strain TM300) 30% 100%
C1CMT3 Streptococcus pneumoniae (strain P1031) 31% 100%
C9ZQH0 Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) 71% 96%
E9B0E5 Leishmania mexicana (strain MHOM/GT/2001/U1103) 89% 98%
G0SEH7 Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 49% 95%
O22268 Arabidopsis thaliana 45% 100%
P41819 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 45% 100%
P78697 Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) 47% 100%
Q09522 Caenorhabditis elegans 46% 100%
Q0KEA7 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) 31% 100%
Q1C0H5 Yersinia pestis bv. Antiqua (strain Antiqua) 30% 100%
Q1CMT2 Yersinia pestis bv. Antiqua (strain Nepal516) 30% 100%
Q1WV73 Ligilactobacillus salivarius (strain UCC118) 33% 100%
Q2KHT8 Bos taurus 54% 100%
Q2W0V3 Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) 32% 100%
Q38V22 Latilactobacillus sakei subsp. sakei (strain 23K) 30% 100%
Q3B3D4 Chlorobium luteolum (strain DSM 273 / BCRC 81028 / 2530) 27% 100%
Q46L58 Prochlorococcus marinus (strain NATL2A) 34% 100%
Q475Q1 Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) 34% 100%
Q47VJ8 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) 30% 100%
Q4L3F0 Staphylococcus haemolyticus (strain JCSC1435) 32% 100%
Q4Q7U7 Leishmania major 89% 100%
Q54QK7 Dictyostelium discoideum 51% 100%
Q5QVN7 Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) 34% 100%
Q66EQ8 Yersinia pseudotuberculosis serotype I (strain IP32953) 31% 100%
Q6BSY5 Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) 46% 100%
Q6C7H6 Yarrowia lipolytica (strain CLIB 122 / E 150) 47% 100%
Q6FKY3 Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) 45% 100%
Q6ME80 Protochlamydia amoebophila (strain UWE25) 30% 100%
Q75C90 Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) 45% 100%
Q88Z93 Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) 32% 100%
Q8TQU8 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) 38% 100%
Q8ZIK5 Yersinia pestis 30% 100%
Q95KJ0 Macaca fascicularis 53% 100%
Q9CHN8 Lactococcus lactis subsp. lactis (strain IL1403) 29% 100%
Q9D0D4 Mus musculus 54% 100%
Q9KGK4 Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) 33% 100%
Q9PPN8 Ureaplasma parvum serovar 3 (strain ATCC 700970) 30% 100%
Q9UNQ2 Homo sapiens 54% 100%
Q9USU2 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 47% 100%
Q9VAQ5 Drosophila melanogaster 52% 100%
V5BCC0 Trypanosoma cruzi 72% 100%

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LeishMANIAdb - Server version: v0.0.2. - Database version: v0.0.1. - ChangeLog - © 2022-2025 Protein Bioinformatics Research Group, Institute of Enzymology, RCNS