U1A_small_nuclear_ribonucleoprotein_putative/Gene DB:LmjF.36.6985

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

RNA-binding protein 14

Species:

Leishmania donovani

UniProt:

A0A3S7XCG8_LEIDO

TriTrypDb:

LdBPK_367330.1 , LdCL_360086000 , LDHU3_36.9720

Length:

164

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 8
NetGPI	no	yes: 0, no: 8

Cellular components
Term	Name	Level	Count
GO:0032991	protein-containing complex	1	7
GO:1990904	ribonucleoprotein complex	2	7
GO:0005634	nucleus	5	1
GO:0005685	U1 snRNP	5	1
GO:0030532	small nuclear ribonucleoprotein complex	3	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0097525	spliceosomal snRNP complex	4	1
GO:0110165	cellular anatomical entity	1	1
GO:0120114	Sm-like protein family complex	2	1
GO:0140513	nuclear protein-containing complex	2	1

Expansion

Sequence features

A0A3S7XCG8

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3S7XCG8

Function

Biological processes
Term	Name	Level	Count
GO:0000365	mRNA trans splicing, via spliceosome	9	1
GO:0000375	RNA splicing, via transesterification reactions	8	1
GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	9	1
GO:0000398	mRNA splicing, via spliceosome	8	1
GO:0006139	nucleobase-containing compound metabolic process	3	1
GO:0006396	RNA processing	6	1
GO:0006397	mRNA processing	7	1
GO:0006725	cellular aromatic compound metabolic process	3	1
GO:0006807	nitrogen compound metabolic process	2	1
GO:0008152	metabolic process	1	1
GO:0008380	RNA splicing	7	1
GO:0009987	cellular process	1	1
GO:0016070	RNA metabolic process	5	1
GO:0016071	mRNA metabolic process	6	1
GO:0034641	cellular nitrogen compound metabolic process	3	1
GO:0043170	macromolecule metabolic process	3	1
GO:0044237	cellular metabolic process	2	1
GO:0044238	primary metabolic process	2	1
GO:0045292	mRNA cis splicing, via spliceosome	9	1
GO:0046483	heterocycle metabolic process	3	1
GO:0071704	organic substance metabolic process	2	1
GO:0090304	nucleic acid metabolic process	4	1
GO:1901360	organic cyclic compound metabolic process	3	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	9
GO:0003723	RNA binding	4	9
GO:0005488	binding	1	9
GO:0097159	organic cyclic compound binding	2	9
GO:1901363	heterocyclic compound binding	2	9
GO:0017069	snRNA binding	5	1
GO:0030619	U1 snRNA binding	6	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	161	163	PF00675	0.498
CLV_NRD_NRD_1	19	21	PF00675	0.563
CLV_PCSK_KEX2_1	161	163	PF00082	0.477
CLV_PCSK_KEX2_1	19	21	PF00082	0.563
CLV_PCSK_SKI1_1	138	142	PF00082	0.421
CLV_PCSK_SKI1_1	20	24	PF00082	0.495
CLV_PCSK_SKI1_1	94	98	PF00082	0.499
DEG_APCC_DBOX_1	18	26	PF00400	0.549
DEG_Nend_UBRbox_2	1	3	PF02207	0.441
DOC_CYCLIN_RxL_1	17	27	PF00134	0.553
DOC_CYCLIN_RxL_1	66	76	PF00134	0.560
DOC_CYCLIN_RxL_1	91	101	PF00134	0.513
DOC_MAPK_gen_1	19	25	PF00069	0.533
DOC_MAPK_gen_1	40	48	PF00069	0.561
DOC_MAPK_HePTP_8	96	108	PF00069	0.451
DOC_MAPK_MEF2A_6	99	108	PF00069	0.456
DOC_USP7_MATH_1	118	122	PF00917	0.481
DOC_WW_Pin1_4	73	78	PF00397	0.573
DOC_WW_Pin1_4	98	103	PF00397	0.514
LIG_14-3-3_CanoR_1	19	23	PF00244	0.478
LIG_14-3-3_CanoR_1	28	33	PF00244	0.506
LIG_14-3-3_CanoR_1	43	49	PF00244	0.332
LIG_14-3-3_CterR_2	161	164	PF00244	0.536
LIG_Clathr_ClatBox_1	58	62	PF01394	0.567
LIG_FHA_1	135	141	PF00498	0.545
LIG_FHA_1	151	157	PF00498	0.482
LIG_FHA_1	8	14	PF00498	0.469
LIG_FHA_1	99	105	PF00498	0.562
LIG_LIR_Gen_1	2	11	PF02991	0.496
LIG_LIR_Gen_1	93	103	PF02991	0.441
LIG_LIR_Nem_3	101	106	PF02991	0.420
LIG_LIR_Nem_3	2	6	PF02991	0.486
LIG_LIR_Nem_3	62	67	PF02991	0.524
LIG_LIR_Nem_3	93	98	PF02991	0.429
LIG_LYPXL_SIV_4	102	110	PF13949	0.560
LIG_PTB_Apo_2	5	12	PF02174	0.499
LIG_PTB_Apo_2	97	104	PF02174	0.554
LIG_PTB_Phospho_1	97	103	PF10480	0.548
LIG_SH2_STAT5	103	106	PF00017	0.511
LIG_SH2_STAT5	159	162	PF00017	0.445
LIG_SH2_STAT5	86	89	PF00017	0.530
LIG_SH2_STAT5	95	98	PF00017	0.422
LIG_SH3_2	79	84	PF14604	0.603
LIG_SH3_3	6	12	PF00018	0.555
LIG_SH3_3	72	78	PF00018	0.573
LIG_SUMO_SIM_par_1	115	121	PF11976	0.519
LIG_SUMO_SIM_par_1	33	41	PF11976	0.450
LIG_SUMO_SIM_par_1	56	62	PF11976	0.552
LIG_TRAF2_1	53	56	PF00917	0.505
LIG_TYR_ITSM	99	106	PF00017	0.522
LIG_WRC_WIRS_1	45	50	PF05994	0.561
MOD_CDC14_SPxK_1	81	84	PF00782	0.609
MOD_CDK_SPxK_1	78	84	PF00069	0.601
MOD_CK1_1	146	152	PF00069	0.641
MOD_CK2_1	44	50	PF00069	0.431
MOD_GlcNHglycan	120	123	PF01048	0.576
MOD_GlcNHglycan	50	54	PF01048	0.439
MOD_GSK3_1	130	137	PF00069	0.497
MOD_GSK3_1	146	153	PF00069	0.583
MOD_GSK3_1	44	51	PF00069	0.437
MOD_GSK3_1	86	93	PF00069	0.375
MOD_N-GLC_1	7	12	PF02516	0.484
MOD_N-GLC_2	125	127	PF02516	0.549
MOD_NEK2_1	48	53	PF00069	0.593
MOD_NEK2_1	71	76	PF00069	0.498
MOD_NEK2_2	123	128	PF00069	0.566
MOD_PK_1	28	34	PF00069	0.556
MOD_PKA_2	18	24	PF00069	0.455
MOD_Plk_1	7	13	PF00069	0.529
MOD_Plk_4	155	161	PF00069	0.474
MOD_ProDKin_1	73	79	PF00069	0.569
MOD_ProDKin_1	98	104	PF00069	0.521
MOD_SUMO_rev_2	132	140	PF00179	0.348
TRG_DiLeu_BaEn_1	135	140	PF01217	0.558
TRG_ENDOCYTIC_2	103	106	PF00928	0.511
TRG_ENDOCYTIC_2	95	98	PF00928	0.470
TRG_ER_diArg_1	160	162	PF00400	0.490

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A1X0NL51	Trypanosomatidae	36%	100%
A0A3R7MQF7	Trypanosoma rangeli	37%	100%
A4HQM1	Leishmania braziliensis	90%	100%
A4ICD9	Leishmania infantum	100%	100%
D0A3S5	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	34%	100%
E9AUD6	Leishmania mexicana (strain MHOM/GT/2001/U1103)	96%	100%
Q4Q054	Leishmania major	98%	100%