LeishMANIAdb
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Exosome complex exonuclease RRP41A

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:
Exosome complex exonuclease RRP41A
Gene product:
Ribosomal RNA processing protein 41A
Species:
Leishmania donovani
UniProt:
A0A3S7XB24_LEIDO
TriTrypDb:
LdBPK_363170.1 , LdCL_360038200 , LDHU3_36.4370
Length:
246

Localization

Secreted promastigote
Source Evidence on protein Close homologs
Cuervo et al. no yes: 0
Hassani et al. no yes: 0
Forrest at al. (metacyclic) no yes: 0
Forrest at al. (procyclic) no yes: 0
Silverman et al. no yes: 0
Pissara et al. no yes: 0
Secreted amastigote
Source Evidence on protein Close homologs
Pires et al. no yes: 0
Exosome
Source Evidence on protein Close homologs
Silverman et al. no yes: 0
Glycosome
Source Evidence on protein Close homologs
Jamdhade et al. no yes: 0
Predictions
Source Evidence on protein Close homologs
DeepLoc
SignalP6 no yes: 0, no: 11
NetGPI no yes: 0, no: 11
Cellular components
Term Name Level Count
GO:0000176 nuclear exosome (RNase complex) 3 1
GO:0000177 cytoplasmic exosome (RNase complex) 5 1
GO:0000178 exosome (RNase complex) 4 1
GO:0005730 nucleolus 5 1
GO:0032991 protein-containing complex 1 1
GO:0043226 organelle 2 1
GO:0043228 non-membrane-bounded organelle 3 1
GO:0043229 intracellular organelle 3 1
GO:0043232 intracellular non-membrane-bounded organelle 4 1
GO:0110165 cellular anatomical entity 1 1
GO:0140513 nuclear protein-containing complex 2 1
GO:1902494 catalytic complex 2 1
GO:1905354 exoribonuclease complex 3 1

Expansion

Sequence features

A0A3S7XB24
Sequence
MSA
Disorder
Secondary
Topology
Domains
SignalP
GPI
Phosphorylations
ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3S7XB24

Function

Biological processes
Term Name Level Count
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 8 1
GO:0000956 nuclear-transcribed mRNA catabolic process 7 1
GO:0006139 nucleobase-containing compound metabolic process 3 1
GO:0006364 rRNA processing 8 1
GO:0006396 RNA processing 6 1
GO:0006401 RNA catabolic process 5 1
GO:0006402 mRNA catabolic process 6 1
GO:0006725 cellular aromatic compound metabolic process 3 1
GO:0006807 nitrogen compound metabolic process 2 1
GO:0008152 metabolic process 1 1
GO:0009056 catabolic process 2 1
GO:0009057 macromolecule catabolic process 4 1
GO:0009892 negative regulation of metabolic process 4 1
GO:0009987 cellular process 1 1
GO:0010468 regulation of gene expression 5 1
GO:0010605 negative regulation of macromolecule metabolic process 5 1
GO:0010629 negative regulation of gene expression 6 1
GO:0016070 RNA metabolic process 5 1
GO:0016071 mRNA metabolic process 6 1
GO:0016072 rRNA metabolic process 7 1
GO:0016073 snRNA metabolic process 7 1
GO:0016074 sno(s)RNA metabolic process 7 1
GO:0016075 rRNA catabolic process 7 1
GO:0016180 snRNA processing 8 1
GO:0019222 regulation of metabolic process 3 1
GO:0019439 aromatic compound catabolic process 4 1
GO:0031123 RNA 3'-end processing 7 1
GO:0031126 sno(s)RNA 3'-end processing 9 1
GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' 9 1
GO:0034470 ncRNA processing 7 1
GO:0034472 snRNA 3'-end processing 8 1
GO:0034475 U4 snRNA 3'-end processing 9 1
GO:0034641 cellular nitrogen compound metabolic process 3 1
GO:0034655 nucleobase-containing compound catabolic process 4 1
GO:0034660 ncRNA metabolic process 6 1
GO:0034661 ncRNA catabolic process 6 1
GO:0043144 sno(s)RNA processing 8 1
GO:0043170 macromolecule metabolic process 3 1
GO:0043628 regulatory ncRNA 3'-end processing 8 1
GO:0044237 cellular metabolic process 2 1
GO:0044238 primary metabolic process 2 1
GO:0044248 cellular catabolic process 3 1
GO:0044260 obsolete cellular macromolecule metabolic process 3 1
GO:0044265 obsolete cellular macromolecule catabolic process 4 1
GO:0044270 cellular nitrogen compound catabolic process 4 1
GO:0046483 heterocycle metabolic process 3 1
GO:0046700 heterocycle catabolic process 4 1
GO:0048519 negative regulation of biological process 3 1
GO:0050789 regulation of biological process 2 1
GO:0060255 regulation of macromolecule metabolic process 4 1
GO:0065007 biological regulation 1 1
GO:0071025 RNA surveillance 6 1
GO:0071027 nuclear RNA surveillance 7 1
GO:0071028 nuclear mRNA surveillance 8 1
GO:0071051 polyadenylation-dependent snoRNA 3'-end processing 10 1
GO:0071704 organic substance metabolic process 2 1
GO:0090304 nucleic acid metabolic process 4 1
GO:1901360 organic cyclic compound metabolic process 3 1
GO:1901361 organic cyclic compound catabolic process 4 1
GO:1901575 organic substance catabolic process 3 1
Molecular functions
Term Name Level Count
GO:0003824 catalytic activity 1 10
GO:0004518 nuclease activity 4 10
GO:0004527 exonuclease activity 5 10
GO:0016787 hydrolase activity 2 10
GO:0016788 hydrolase activity, acting on ester bonds 3 10

Putative motif mimicry

Leishmania From To Domain/Motif Score
CLV_NRD_NRD_1 18 20 PF00675 0.421
CLV_NRD_NRD_1 230 232 PF00675 0.523
CLV_NRD_NRD_1 24 26 PF00675 0.253
CLV_NRD_NRD_1 86 88 PF00675 0.253
CLV_NRD_NRD_1 91 93 PF00675 0.253
CLV_PCSK_KEX2_1 18 20 PF00082 0.407
CLV_PCSK_KEX2_1 24 26 PF00082 0.253
CLV_PCSK_KEX2_1 86 88 PF00082 0.255
CLV_PCSK_KEX2_1 91 93 PF00082 0.256
CLV_PCSK_PC7_1 14 20 PF00082 0.418
CLV_PCSK_PC7_1 87 93 PF00082 0.294
CLV_PCSK_SKI1_1 213 217 PF00082 0.264
CLV_PCSK_SKI1_1 231 235 PF00082 0.356
CLV_PCSK_SKI1_1 239 243 PF00082 0.480
DOC_CYCLIN_RxL_1 237 246 PF00134 0.406
DOC_MAPK_gen_1 24 30 PF00069 0.457
DOC_MAPK_RevD_3 11 25 PF00069 0.536
DOC_PP1_RVXF_1 193 200 PF00149 0.531
DOC_USP7_MATH_1 56 60 PF00917 0.539
DOC_USP7_UBL2_3 62 66 PF12436 0.539
DOC_WW_Pin1_4 6 11 PF00397 0.493
LIG_APCC_ABBA_1 121 126 PF00400 0.539
LIG_BIR_II_1 1 5 PF00653 0.576
LIG_FHA_1 192 198 PF00498 0.490
LIG_FHA_1 71 77 PF00498 0.486
LIG_FHA_2 172 178 PF00498 0.451
LIG_FHA_2 188 194 PF00498 0.502
LIG_LIR_Apic_2 6 10 PF02991 0.446
LIG_LIR_Nem_3 27 33 PF02991 0.455
LIG_Rb_LxCxE_1 210 228 PF01857 0.558
LIG_SH2_PTP2 124 127 PF00017 0.539
LIG_SH2_PTP2 7 10 PF00017 0.438
LIG_SH2_SRC 124 127 PF00017 0.539
LIG_SH2_STAT5 124 127 PF00017 0.539
LIG_SH2_STAT5 7 10 PF00017 0.422
LIG_SH3_3 50 56 PF00018 0.436
LIG_SUMO_SIM_anti_2 109 114 PF11976 0.464
LIG_SUMO_SIM_par_1 109 114 PF11976 0.494
LIG_SUMO_SIM_par_1 169 174 PF11976 0.445
LIG_SUMO_SIM_par_1 240 246 PF11976 0.421
LIG_TRAF2_1 233 236 PF00917 0.422
MOD_CK1_1 93 99 PF00069 0.340
MOD_CK2_1 171 177 PF00069 0.282
MOD_Cter_Amidation 16 19 PF01082 0.427
MOD_GlcNHglycan 209 212 PF01048 0.356
MOD_GlcNHglycan 33 36 PF01048 0.340
MOD_GSK3_1 187 194 PF00069 0.368
MOD_GSK3_1 36 43 PF00069 0.329
MOD_NEK2_1 225 230 PF00069 0.473
MOD_NEK2_1 44 49 PF00069 0.465
MOD_NEK2_2 56 61 PF00069 0.426
MOD_PIKK_1 111 117 PF00454 0.302
MOD_PIKK_1 177 183 PF00454 0.315
MOD_PKA_2 56 62 PF00069 0.426
MOD_PKA_2 90 96 PF00069 0.316
MOD_Plk_1 40 46 PF00069 0.457
MOD_ProDKin_1 6 12 PF00069 0.492
TRG_DiLeu_BaLyEn_6 210 215 PF01217 0.426
TRG_ENDOCYTIC_2 124 127 PF00928 0.426
TRG_ER_diArg_1 18 20 PF00400 0.422
TRG_ER_diArg_1 24 26 PF00400 0.306
TRG_Pf-PMV_PEXEL_1 232 236 PF00026 0.509

Homologs

Protein Taxonomy Sequence identity Coverage
A0A0N1ILN0 Leptomonas seymouri 81% 100%
A0A0S4JH49 Bodo saltans 28% 100%
A0A0S4KJT7 Bodo saltans 44% 92%
A0A1X0NKC4 Trypanosomatidae 56% 98%
A0A3R7MIE4 Trypanosoma rangeli 57% 98%
A0A3S7XBS2 Leishmania donovani 28% 100%
A0RXU1 Cenarchaeum symbiosum (strain A) 31% 100%
A1RST0 Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) 34% 100%
A1TD14 Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) 24% 95%
A2BKC0 Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5) 31% 96%
A2RVK7 Arabidopsis thaliana 27% 96%
A3MUP1 Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1) 35% 100%
A4HPG8 Leishmania braziliensis 89% 100%
A4HQ06 Leishmania braziliensis 28% 100%
A4ID90 Leishmania infantum 99% 100%
A4IDR7 Leishmania infantum 28% 100%
A4QGQ6 Corynebacterium glutamicum (strain R) 27% 100%
A8WQQ5 Caenorhabditis briggsae 33% 100%
A9A5C9 Nitrosopumilus maritimus (strain SCM1) 29% 100%
B0K3T4 Thermoanaerobacter sp. (strain X514) 27% 94%
B0KBM5 Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) 27% 94%
B0UP55 Methylobacterium sp. (strain 4-46) 27% 100%
B1VVV6 Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) 27% 100%
B1Y978 Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta) 34% 100%
B5YEU4 Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) 24% 100%
B6JCH9 Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) 25% 100%
B6YSI2 Thermococcus onnurineus (strain NA1) 32% 99%
B8IFR7 Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) 26% 100%
B8ZR59 Mycobacterium leprae (strain Br4923) 27% 95%
C0ZAF8 Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) 25% 97%
C1A1V2 Rhodococcus erythropolis (strain PR4 / NBRC 100887) 25% 94%
C5A2B9 Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) 33% 99%
D0A3H8 Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) 57% 98%
E9AT80 Leishmania mexicana (strain MHOM/GT/2001/U1103) 96% 100%
E9ATS3 Leishmania mexicana (strain MHOM/GT/2001/U1103) 28% 100%
O26779 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) 31% 100%
O29757 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) 32% 95%
O42872 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 33% 100%
O42894 Schizosaccharomyces pombe (strain 972 / ATCC 24843) 29% 100%
O59223 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) 31% 99%
O67069 Aquifex aeolicus (strain VF5) 25% 96%
P37939 Mycobacterium leprae (strain TN) 27% 95%
P46948 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 30% 100%
Q13E56 Rhodopseudomonas palustris (strain BisB5) 25% 100%
Q17533 Caenorhabditis elegans 33% 100%
Q28F19 Xenopus tropicalis 30% 91%
Q3AFA0 Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) 23% 97%
Q4JB27 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) 31% 100%
Q4Q0S3 Leishmania major 28% 100%
Q4Q1B7 Leishmania major 97% 100%
Q5JIR6 Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) 32% 99%
Q74C79 Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) 27% 100%
Q7YRA3 Bos taurus 36% 100%
Q89WK4 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) 26% 100%
Q8G7I0 Bifidobacterium longum (strain NCC 2705) 28% 99%
Q8NMR4 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) 27% 100%
Q8RC30 Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) 26% 94%
Q8TYC1 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) 32% 100%
Q8U0L9 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) 32% 98%
Q8ZVM9 Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) 34% 100%
Q921I9 Mus musculus 37% 100%
Q975G8 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) 35% 100%
Q97BZ5 Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) 38% 99%
Q9HIP2 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) 34% 99%
Q9NPD3 Homo sapiens 37% 100%
Q9S2H7 Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) 27% 100%
Q9SP08 Arabidopsis thaliana 36% 100%
Q9UXC2 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) 32% 99%
Q9V119 Pyrococcus abyssi (strain GE5 / Orsay) 32% 99%
Q9YC03 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) 32% 100%
V5AP50 Trypanosoma cruzi 25% 95%
V5BKB5 Trypanosoma cruzi 56% 98%

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LeishMANIAdb - Server version: v0.0.2. - Database version: v0.0.1. - ChangeLog - © 2022-2025 Protein Bioinformatics Research Group, Institute of Enzymology, RCNS