Zinc finger, C3HC4 type (RING finger)/Ring finger domain/zinc-RING finger domain/zinc finger of C3HC4-type, RING, putative

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

Zinc finger, C3HC4 type (RING finger), putative

Species:

Leishmania donovani

UniProt:

A0A3S7WQF9_LEIDO

TriTrypDb:

LdBPK_081130.1 , LdCL_080016900 , LDHU3_08.1600

Length:

506

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0005737	cytoplasm	2	12
GO:0110165	cellular anatomical entity	1	12

Expansion

Sequence features

A0A3S7WQF9

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3S7WQF9

Function

Biological processes
Term	Name	Level	Count
GO:0006355	regulation of DNA-templated transcription	6	1
GO:0006357	regulation of transcription by RNA polymerase II	7	1
GO:0009889	regulation of biosynthetic process	4	1
GO:0009891	positive regulation of biosynthetic process	5	1
GO:0009893	positive regulation of metabolic process	4	1
GO:0010468	regulation of gene expression	5	1
GO:0010556	regulation of macromolecule biosynthetic process	5	1
GO:0010557	positive regulation of macromolecule biosynthetic process	6	1
GO:0010604	positive regulation of macromolecule metabolic process	5	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	5	1
GO:0019222	regulation of metabolic process	3	1
GO:0031323	regulation of cellular metabolic process	4	1
GO:0031325	positive regulation of cellular metabolic process	5	1
GO:0031326	regulation of cellular biosynthetic process	5	1
GO:0031328	positive regulation of cellular biosynthetic process	6	1
GO:0045893	positive regulation of DNA-templated transcription	7	1
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	6	1
GO:0045944	positive regulation of transcription by RNA polymerase II	8	1
GO:0048518	positive regulation of biological process	3	1
GO:0048522	positive regulation of cellular process	4	1
GO:0050789	regulation of biological process	2	1
GO:0050794	regulation of cellular process	3	1
GO:0051171	regulation of nitrogen compound metabolic process	4	1
GO:0051173	positive regulation of nitrogen compound metabolic process	5	1
GO:0051252	regulation of RNA metabolic process	5	1
GO:0051254	positive regulation of RNA metabolic process	6	1
GO:0060255	regulation of macromolecule metabolic process	4	1
GO:0065007	biological regulation	1	1
GO:0080090	regulation of primary metabolic process	4	1
GO:1902680	positive regulation of RNA biosynthetic process	7	1
GO:1903506	regulation of nucleic acid-templated transcription	7	1
GO:1903508	positive regulation of nucleic acid-templated transcription	8	1
GO:2001141	regulation of RNA biosynthetic process	6	1

Molecular functions
Term	Name	Level	Count
GO:0005488	binding	1	12
GO:0043167	ion binding	2	12
GO:0043169	cation binding	3	12
GO:0046872	metal ion binding	4	12
GO:0000976	transcription cis-regulatory region binding	5	1
GO:0001067	transcription regulatory region nucleic acid binding	4	1
GO:0003676	nucleic acid binding	3	1
GO:0003677	DNA binding	4	1
GO:0003690	double-stranded DNA binding	5	1
GO:0043565	sequence-specific DNA binding	5	1
GO:0097159	organic cyclic compound binding	2	1
GO:1901363	heterocyclic compound binding	2	1
GO:1990837	sequence-specific double-stranded DNA binding	6	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	213	217	PF00656	0.569
CLV_NRD_NRD_1	122	124	PF00675	0.491
CLV_NRD_NRD_1	143	145	PF00675	0.400
CLV_NRD_NRD_1	27	29	PF00675	0.474
CLV_NRD_NRD_1	316	318	PF00675	0.438
CLV_NRD_NRD_1	364	366	PF00675	0.515
CLV_NRD_NRD_1	489	491	PF00675	0.659
CLV_NRD_NRD_1	96	98	PF00675	0.394
CLV_PCSK_KEX2_1	122	124	PF00082	0.465
CLV_PCSK_KEX2_1	134	136	PF00082	0.303
CLV_PCSK_KEX2_1	143	145	PF00082	0.363
CLV_PCSK_KEX2_1	27	29	PF00082	0.520
CLV_PCSK_KEX2_1	316	318	PF00082	0.543
CLV_PCSK_KEX2_1	364	366	PF00082	0.524
CLV_PCSK_KEX2_1	441	443	PF00082	0.603
CLV_PCSK_PC1ET2_1	134	136	PF00082	0.443
CLV_PCSK_PC1ET2_1	441	443	PF00082	0.603
CLV_PCSK_SKI1_1	221	225	PF00082	0.433
CLV_PCSK_SKI1_1	251	255	PF00082	0.712
CLV_PCSK_SKI1_1	282	286	PF00082	0.492
CLV_PCSK_SKI1_1	347	351	PF00082	0.519
CLV_PCSK_SKI1_1	491	495	PF00082	0.614
DEG_APCC_DBOX_1	220	228	PF00400	0.523
DEG_APCC_DBOX_1	9	17	PF00400	0.530
DEG_Nend_Nbox_1	1	3	PF02207	0.436
DEG_SCF_FBW7_2	180	187	PF00400	0.499
DEG_SCF_FBW7_2	252	259	PF00400	0.715
DEG_SPOP_SBC_1	465	469	PF00917	0.729
DOC_CKS1_1	105	110	PF01111	0.487
DOC_CKS1_1	181	186	PF01111	0.506
DOC_CKS1_1	253	258	PF01111	0.698
DOC_CYCLIN_RxL_1	218	225	PF00134	0.502
DOC_CYCLIN_yCln2_LP_2	105	111	PF00134	0.481
DOC_MAPK_gen_1	27	35	PF00069	0.515
DOC_MAPK_gen_1	316	327	PF00069	0.393
DOC_PP2B_LxvP_1	150	153	PF13499	0.561
DOC_PP2B_LxvP_1	341	344	PF13499	0.495
DOC_PP2B_LxvP_1	414	417	PF13499	0.647
DOC_PP4_FxxP_1	57	60	PF00568	0.331
DOC_USP7_MATH_1	465	469	PF00917	0.673
DOC_USP7_MATH_1	477	481	PF00917	0.421
DOC_USP7_MATH_1	493	497	PF00917	0.579
DOC_USP7_UBL2_3	285	289	PF12436	0.491
DOC_USP7_UBL2_3	483	487	PF12436	0.673
DOC_USP7_UBL2_3	491	495	PF12436	0.583
DOC_WW_Pin1_4	104	109	PF00397	0.493
DOC_WW_Pin1_4	180	185	PF00397	0.505
DOC_WW_Pin1_4	242	247	PF00397	0.572
DOC_WW_Pin1_4	252	257	PF00397	0.601
DOC_WW_Pin1_4	393	398	PF00397	0.586
DOC_WW_Pin1_4	50	55	PF00397	0.472
DOC_WW_Pin1_4	501	506	PF00397	0.710
LIG_14-3-3_CanoR_1	143	150	PF00244	0.521
LIG_14-3-3_CanoR_1	178	184	PF00244	0.487
LIG_14-3-3_CanoR_1	251	256	PF00244	0.705
LIG_14-3-3_CanoR_1	370	378	PF00244	0.534
LIG_14-3-3_CanoR_1	70	78	PF00244	0.361
LIG_Actin_WH2_2	276	293	PF00022	0.504
LIG_AP2alpha_2	147	149	PF02296	0.556
LIG_APCC_ABBA_1	263	268	PF00400	0.506
LIG_FHA_1	17	23	PF00498	0.474
LIG_FHA_1	207	213	PF00498	0.604
LIG_FHA_1	298	304	PF00498	0.460
LIG_FHA_1	313	319	PF00498	0.429
LIG_FHA_1	406	412	PF00498	0.683
LIG_FHA_2	252	258	PF00498	0.698
LIG_FHA_2	51	57	PF00498	0.445
LIG_Integrin_RGD_1	459	461	PF01839	0.734
LIG_LIR_Apic_2	55	60	PF02991	0.372
LIG_LIR_Gen_1	410	417	PF02991	0.650
LIG_LIR_Nem_3	375	381	PF02991	0.437
LIG_LIR_Nem_3	410	416	PF02991	0.599
LIG_PTAP_UEV_1	65	70	PF05743	0.401
LIG_PTB_Apo_2	1	8	PF02174	0.368
LIG_SH2_CRK	78	82	PF00017	0.411
LIG_SH2_GRB2like	385	388	PF00017	0.516
LIG_SH2_SRC	266	269	PF00017	0.400
LIG_SH2_STAP1	192	196	PF00017	0.572
LIG_SH2_STAT5	109	112	PF00017	0.465
LIG_SH2_STAT5	179	182	PF00017	0.361
LIG_SH2_STAT5	275	278	PF00017	0.374
LIG_SH2_STAT5	381	384	PF00017	0.429
LIG_SH2_STAT5	413	416	PF00017	0.690
LIG_SH2_STAT5	78	81	PF00017	0.318
LIG_SH3_3	150	156	PF00018	0.598
LIG_SH3_3	244	250	PF00018	0.572
LIG_SH3_3	451	457	PF00018	0.630
LIG_SH3_3	499	505	PF00018	0.622
LIG_SH3_3	63	69	PF00018	0.389
LIG_SUMO_SIM_par_1	12	19	PF11976	0.574
LIG_TRAF2_1	53	56	PF00917	0.468
LIG_TRFH_1	109	113	PF08558	0.477
LIG_TYR_ITIM	411	416	PF00017	0.688
LIG_UBA3_1	223	232	PF00899	0.522
LIG_UBA3_1	83	91	PF00899	0.411
MOD_CDK_SPK_2	501	506	PF00069	0.656
MOD_CK1_1	174	180	PF00069	0.428
MOD_CK1_1	386	392	PF00069	0.625
MOD_CK1_1	396	402	PF00069	0.415
MOD_CK1_1	405	411	PF00069	0.561
MOD_CK1_1	418	424	PF00069	0.636
MOD_CK2_1	212	218	PF00069	0.604
MOD_CK2_1	251	257	PF00069	0.770
MOD_CK2_1	449	455	PF00069	0.668
MOD_CK2_1	50	56	PF00069	0.413
MOD_GlcNHglycan	157	160	PF01048	0.637
MOD_GlcNHglycan	388	391	PF01048	0.626
MOD_GlcNHglycan	420	423	PF01048	0.690
MOD_GlcNHglycan	451	454	PF01048	0.697
MOD_GlcNHglycan	479	482	PF01048	0.594
MOD_GSK3_1	12	19	PF00069	0.536
MOD_GSK3_1	206	213	PF00069	0.607
MOD_GSK3_1	305	312	PF00069	0.508
MOD_GSK3_1	370	377	PF00069	0.500
MOD_GSK3_1	455	462	PF00069	0.710
MOD_N-GLC_1	386	391	PF02516	0.538
MOD_N-GLC_2	138	140	PF02516	0.470
MOD_NEK2_1	14	19	PF00069	0.656
MOD_NEK2_1	35	40	PF00069	0.510
MOD_NEK2_1	383	388	PF00069	0.576
MOD_NEK2_1	449	454	PF00069	0.739
MOD_PIKK_1	16	22	PF00454	0.579
MOD_PIKK_1	206	212	PF00454	0.592
MOD_PKA_2	136	142	PF00069	0.452
MOD_PKA_2	383	389	PF00069	0.619
MOD_PKA_2	437	443	PF00069	0.598
MOD_PKA_2	69	75	PF00069	0.400
MOD_Plk_1	374	380	PF00069	0.471
MOD_Plk_1	402	408	PF00069	0.630
MOD_Plk_2-3	305	311	PF00069	0.512
MOD_Plk_4	237	243	PF00069	0.668
MOD_Plk_4	35	41	PF00069	0.497
MOD_Plk_4	44	50	PF00069	0.454
MOD_Plk_4	444	450	PF00069	0.713
MOD_ProDKin_1	104	110	PF00069	0.488
MOD_ProDKin_1	180	186	PF00069	0.500
MOD_ProDKin_1	242	248	PF00069	0.577
MOD_ProDKin_1	252	258	PF00069	0.597
MOD_ProDKin_1	393	399	PF00069	0.586
MOD_ProDKin_1	50	56	PF00069	0.478
MOD_SUMO_for_1	486	489	PF00179	0.706
MOD_SUMO_rev_2	229	237	PF00179	0.596
TRG_DiLeu_BaEn_2	217	223	PF01217	0.517
TRG_ENDOCYTIC_2	275	278	PF00928	0.396
TRG_ENDOCYTIC_2	319	322	PF00928	0.405
TRG_ENDOCYTIC_2	413	416	PF00928	0.662
TRG_ER_diArg_1	121	123	PF00400	0.522
TRG_ER_diArg_1	142	144	PF00400	0.428
TRG_ER_diArg_1	27	29	PF00400	0.520
TRG_ER_diArg_1	316	318	PF00400	0.548
TRG_ER_diArg_1	364	367	PF00400	0.524
TRG_NLS_Bipartite_1	122	138	PF00514	0.467
TRG_Pf-PMV_PEXEL_1	203	207	PF00026	0.506
TRG_Pf-PMV_PEXEL_1	221	225	PF00026	0.237
TRG_Pf-PMV_PEXEL_1	27	31	PF00026	0.443

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1HWK4	Leptomonas seymouri	69%	86%
A0A1X0NGG7	Trypanosomatidae	41%	93%
A0A3S5H6A1	Leishmania donovani	100%	100%
A0A422NFU0	Trypanosoma rangeli	38%	94%
A4HC42	Leishmania braziliensis	86%	100%
C9ZPG2	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	36%	94%
E9AG88	Leishmania infantum	100%	100%
E9AMJ2	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
O94271	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	21%	75%
Q06436	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	21%	76%
Q32NQ8	Xenopus laevis	23%	67%
Q4QI41	Leishmania major	97%	100%
V5DAD1	Trypanosoma cruzi	40%	93%