Guide_RNA_binding_protein_putative/GeneDB:LmjF.08.1170

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

MRB1 complex subunit MRB3010

Species:

Leishmania donovani

UniProt:

A0A3S5H691_LEIDO

TriTrypDb:

LdBPK_081080.1 , LdCL_080016400 , LDHU3_08.1530

Length:

442

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 18
NetGPI	no	yes: 0, no: 18

Cellular components
Term	Name	Level	Count
GO:0005739	mitochondrion	5	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

A0A3S5H691

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3S5H691

Function

Biological processes
Term	Name	Level	Count
GO:0000959	mitochondrial RNA metabolic process	6	1
GO:0006139	nucleobase-containing compound metabolic process	3	1
GO:0006396	RNA processing	6	1
GO:0006725	cellular aromatic compound metabolic process	3	1
GO:0006807	nitrogen compound metabolic process	2	1
GO:0008152	metabolic process	1	1
GO:0009451	RNA modification	5	1
GO:0009987	cellular process	1	1
GO:0016070	RNA metabolic process	5	1
GO:0034641	cellular nitrogen compound metabolic process	3	1
GO:0043170	macromolecule metabolic process	3	1
GO:0043412	macromolecule modification	4	1
GO:0044237	cellular metabolic process	2	1
GO:0044238	primary metabolic process	2	1
GO:0046483	heterocycle metabolic process	3	1
GO:0071704	organic substance metabolic process	2	1
GO:0090304	nucleic acid metabolic process	4	1
GO:1900864	mitochondrial RNA modification	6	1
GO:1901360	organic cyclic compound metabolic process	3	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	1
GO:0003723	RNA binding	4	1
GO:0003729	mRNA binding	5	1
GO:0005488	binding	1	1
GO:0097159	organic cyclic compound binding	2	1
GO:1901363	heterocyclic compound binding	2	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	175	177	PF00675	0.377
CLV_NRD_NRD_1	19	21	PF00675	0.379
CLV_NRD_NRD_1	375	377	PF00675	0.290
CLV_PCSK_KEX2_1	175	177	PF00082	0.333
CLV_PCSK_KEX2_1	19	21	PF00082	0.379
CLV_PCSK_KEX2_1	208	210	PF00082	0.356
CLV_PCSK_KEX2_1	319	321	PF00082	0.320
CLV_PCSK_KEX2_1	375	377	PF00082	0.290
CLV_PCSK_PC1ET2_1	208	210	PF00082	0.356
CLV_PCSK_PC1ET2_1	319	321	PF00082	0.335
CLV_PCSK_SKI1_1	111	115	PF00082	0.334
CLV_PCSK_SKI1_1	19	23	PF00082	0.380
CLV_PCSK_SKI1_1	346	350	PF00082	0.472
CLV_PCSK_SKI1_1	375	379	PF00082	0.270
CLV_PCSK_SKI1_1	390	394	PF00082	0.298
CLV_PCSK_SKI1_1	398	402	PF00082	0.283
DEG_APCC_DBOX_1	374	382	PF00400	0.271
DEG_Nend_UBRbox_1	1	4	PF02207	0.405
DOC_CKS1_1	391	396	PF01111	0.292
DOC_CYCLIN_RxL_1	17	26	PF00134	0.362
DOC_CYCLIN_RxL_1	372	380	PF00134	0.437
DOC_CYCLIN_RxL_1	395	405	PF00134	0.326
DOC_MAPK_gen_1	54	62	PF00069	0.406
DOC_MAPK_gen_1	65	74	PF00069	0.364
DOC_MAPK_gen_1	88	96	PF00069	0.329
DOC_MAPK_MEF2A_6	65	74	PF00069	0.354
DOC_PP1_RVXF_1	159	165	PF00149	0.382
DOC_PP1_RVXF_1	17	24	PF00149	0.368
DOC_PP1_RVXF_1	373	380	PF00149	0.286
DOC_PP4_FxxP_1	407	410	PF00568	0.383
DOC_PP4_FxxP_1	427	430	PF00568	0.356
DOC_USP7_UBL2_3	198	202	PF12436	0.360
DOC_USP7_UBL2_3	383	387	PF12436	0.299
DOC_WW_Pin1_4	390	395	PF00397	0.356
LIG_14-3-3_CanoR_1	137	142	PF00244	0.286
LIG_14-3-3_CanoR_1	175	181	PF00244	0.369
LIG_14-3-3_CanoR_1	183	187	PF00244	0.352
LIG_14-3-3_CanoR_1	320	328	PF00244	0.293
LIG_14-3-3_CanoR_1	376	382	PF00244	0.298
LIG_14-3-3_CanoR_1	398	403	PF00244	0.504
LIG_14-3-3_CterR_2	438	442	PF00244	0.414
LIG_APCC_ABBA_1	400	405	PF00400	0.357
LIG_BIR_III_4	109	113	PF00653	0.378
LIG_BRCT_BRCA1_1	206	210	PF00533	0.340
LIG_FHA_1	112	118	PF00498	0.372
LIG_FHA_1	345	351	PF00498	0.334
LIG_FHA_2	183	189	PF00498	0.352
LIG_LIR_Apic_2	405	410	PF02991	0.368
LIG_LIR_Apic_2	426	430	PF02991	0.411
LIG_LIR_Gen_1	269	278	PF02991	0.372
LIG_LIR_Gen_1	279	289	PF02991	0.286
LIG_LIR_Gen_1	417	427	PF02991	0.480
LIG_LIR_Gen_1	67	77	PF02991	0.499
LIG_LIR_Nem_3	128	134	PF02991	0.293
LIG_LIR_Nem_3	241	247	PF02991	0.377
LIG_LIR_Nem_3	269	273	PF02991	0.316
LIG_LIR_Nem_3	279	284	PF02991	0.242
LIG_LIR_Nem_3	315	321	PF02991	0.321
LIG_LIR_Nem_3	330	335	PF02991	0.341
LIG_LIR_Nem_3	417	423	PF02991	0.328
LIG_LIR_Nem_3	67	72	PF02991	0.396
LIG_NRBOX	129	135	PF00104	0.296
LIG_Pex14_2	344	348	PF04695	0.454
LIG_Pex14_2	423	427	PF04695	0.481
LIG_PTB_Apo_2	63	70	PF02174	0.479
LIG_SH2_CRK	240	244	PF00017	0.312
LIG_SH2_STAP1	240	244	PF00017	0.312
LIG_SH2_STAT3	217	220	PF00017	0.336
LIG_SH2_STAT5	217	220	PF00017	0.336
LIG_SH2_STAT5	235	238	PF00017	0.331
LIG_SH2_STAT5	262	265	PF00017	0.295
LIG_SH2_STAT5	364	367	PF00017	0.361
LIG_SH2_STAT5	46	49	PF00017	0.343
LIG_SH3_3	383	389	PF00018	0.353
LIG_SH3_3	419	425	PF00018	0.495
LIG_SUMO_SIM_anti_2	36	41	PF11976	0.324
LIG_SUMO_SIM_anti_2	71	76	PF11976	0.330
LIG_SUMO_SIM_par_1	352	360	PF11976	0.401
LIG_SUMO_SIM_par_1	75	80	PF11976	0.334
LIG_TYR_ITIM	238	243	PF00017	0.329
LIG_UBA3_1	377	383	PF00899	0.285
LIG_WRC_WIRS_1	267	272	PF05994	0.492
LIG_WW_1	429	432	PF00397	0.331
MOD_CK1_1	118	124	PF00069	0.333
MOD_CK2_1	176	182	PF00069	0.407
MOD_GlcNHglycan	117	120	PF01048	0.356
MOD_GSK3_1	111	118	PF00069	0.322
MOD_GSK3_1	262	269	PF00069	0.312
MOD_GSK3_1	320	327	PF00069	0.266
MOD_GSK3_1	434	441	PF00069	0.468
MOD_GSK3_1	77	84	PF00069	0.309
MOD_N-GLC_2	397	399	PF02516	0.315
MOD_NEK2_1	120	125	PF00069	0.338
MOD_NEK2_1	22	27	PF00069	0.348
MOD_NEK2_1	302	307	PF00069	0.412
MOD_NEK2_1	337	342	PF00069	0.287
MOD_NEK2_1	344	349	PF00069	0.317
MOD_NEK2_1	377	382	PF00069	0.266
MOD_NEK2_1	40	45	PF00069	0.438
MOD_NEK2_1	434	439	PF00069	0.360
MOD_NEK2_2	132	137	PF00069	0.273
MOD_NEK2_2	81	86	PF00069	0.317
MOD_PKA_2	182	188	PF00069	0.349
MOD_Plk_2-3	182	188	PF00069	0.356
MOD_ProDKin_1	390	396	PF00069	0.352
MOD_SUMO_for_1	312	315	PF00179	0.352
MOD_SUMO_rev_2	197	207	PF00179	0.350
MOD_SUMO_rev_2	294	300	PF00179	0.456
TRG_DiLeu_BaEn_1	148	153	PF01217	0.308
TRG_DiLeu_BaLyEn_6	373	378	PF01217	0.426
TRG_DiLeu_LyEn_5	188	193	PF01217	0.296
TRG_ENDOCYTIC_2	235	238	PF00928	0.334
TRG_ENDOCYTIC_2	240	243	PF00928	0.317
TRG_ENDOCYTIC_2	46	49	PF00928	0.359
TRG_ER_diArg_1	161	164	PF00400	0.348
TRG_ER_diArg_1	19	21	PF00400	0.379
TRG_ER_diArg_1	374	376	PF00400	0.294
TRG_NES_CRM1_1	128	139	PF08389	0.299

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P6Z9	Leptomonas seymouri	24%	92%
A0A0N1HY66	Leptomonas seymouri	89%	82%
A0A0S4IS85	Bodo saltans	84%	84%
A0A1X0NEZ9	Trypanosomatidae	87%	86%
A0A1X0P8G7	Trypanosomatidae	26%	91%
A0A422NFX5	Trypanosoma rangeli	86%	85%
A0A422P283	Trypanosoma rangeli	27%	92%
A4H5F5	Leishmania braziliensis	97%	100%
A4HNQ2	Leishmania braziliensis	24%	100%
A4HTQ0	Leishmania infantum	100%	100%
C9ZPF4	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	86%	86%
D0A2L1	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	25%	94%
E9AMI7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	100%	100%
E9ASG1	Leishmania mexicana (strain MHOM/GT/2001/U1103)	25%	92%
Q4QI52	Leishmania major	99%	100%
V5BEF0	Trypanosoma cruzi	86%	85%
V5BQI6	Trypanosoma cruzi	26%	92%