Ubiquitin_fusion_degradation_protein_putative/Gen eDB:LmjF.36.6490

Quick info Annotations Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

ubiquitin fusion degradation protein, putative

Species:

Leishmania donovani

UniProt:

A0A3Q8IWM4_LEIDO

TriTrypDb:

LdBPK_366780.1 , LdCL_360080300 , LDHU3_36.9040

Length:

325

Annotations

Annotations by Jardim et al.

Protein modification, ubiquitin fusion degradation

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0032991	protein-containing complex	1	1
GO:0034098	VCP-NPL4-UFD1 AAA ATPase complex	3	1
GO:0098796	membrane protein complex	2	1
GO:0140534	endoplasmic reticulum protein-containing complex	2	1

Expansion

Sequence features

A0A3Q8IWM4

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IWM4

Function

Biological processes
Term	Name	Level	Count
GO:0006508	proteolysis	4	12
GO:0006511	ubiquitin-dependent protein catabolic process	7	12
GO:0006807	nitrogen compound metabolic process	2	12
GO:0008152	metabolic process	1	12
GO:0009056	catabolic process	2	12
GO:0009057	macromolecule catabolic process	4	12
GO:0009987	cellular process	1	12
GO:0019538	protein metabolic process	3	12
GO:0019941	modification-dependent protein catabolic process	6	12
GO:0043170	macromolecule metabolic process	3	12
GO:0043632	modification-dependent macromolecule catabolic process	5	12
GO:0044237	cellular metabolic process	2	12
GO:0044238	primary metabolic process	2	12
GO:0044248	cellular catabolic process	3	12
GO:0044260	obsolete cellular macromolecule metabolic process	3	12
GO:0044265	obsolete cellular macromolecule catabolic process	4	12
GO:0051603	proteolysis involved in protein catabolic process	5	12
GO:0071704	organic substance metabolic process	2	12
GO:1901564	organonitrogen compound metabolic process	3	12
GO:1901575	organic substance catabolic process	3	12
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	6	1
GO:0006950	response to stress	2	1
GO:0010033	response to organic substance	3	1
GO:0010243	response to organonitrogen compound	4	1
GO:0010498	proteasomal protein catabolic process	5	1
GO:0030163	protein catabolic process	4	1
GO:0030433	ubiquitin-dependent ERAD pathway	6	1
GO:0033554	cellular response to stress	3	1
GO:0034976	response to endoplasmic reticulum stress	4	1
GO:0036503	ERAD pathway	5	1
GO:0042221	response to chemical	2	1
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	6	1
GO:0050896	response to stimulus	1	1
GO:0051716	cellular response to stimulus	2	1
GO:0071712	ER-associated misfolded protein catabolic process	6	1
GO:1901565	organonitrogen compound catabolic process	4	1
GO:1901698	response to nitrogen compound	3	1

Molecular functions
Term	Name	Level	Count
GO:0005488	binding	1	1
GO:0005515	protein binding	2	1
GO:0031593	polyubiquitin modification-dependent protein binding	4	1
GO:0140030	modification-dependent protein binding	3	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	231	235	PF00656	0.711
CLV_PCSK_KEX2_1	60	62	PF00082	0.340
CLV_PCSK_PC1ET2_1	60	62	PF00082	0.340
CLV_PCSK_SKI1_1	123	127	PF00082	0.276
CLV_PCSK_SKI1_1	281	285	PF00082	0.747
CLV_PCSK_SKI1_1	30	34	PF00082	0.276
DOC_CDC14_PxL_1	130	138	PF14671	0.487
DOC_CKS1_1	196	201	PF01111	0.711
DOC_CKS1_1	54	59	PF01111	0.562
DOC_MAPK_DCC_7	43	52	PF00069	0.562
DOC_MAPK_gen_1	162	172	PF00069	0.558
DOC_MAPK_MEF2A_6	123	130	PF00069	0.562
DOC_MAPK_NFAT4_5	123	131	PF00069	0.562
DOC_PP1_RVXF_1	180	186	PF00149	0.476
DOC_PP2B_LxvP_1	189	192	PF13499	0.543
DOC_PP4_FxxP_1	119	122	PF00568	0.562
DOC_PP4_FxxP_1	185	188	PF00568	0.476
DOC_PP4_FxxP_1	227	230	PF00568	0.628
DOC_USP7_MATH_1	249	253	PF00917	0.768
DOC_USP7_MATH_1	259	263	PF00917	0.798
DOC_USP7_MATH_1	293	297	PF00917	0.689
DOC_USP7_MATH_1	304	308	PF00917	0.601
DOC_WD40_RPTOR_TOS_1	151	157	PF00400	0.562
DOC_WW_Pin1_4	191	196	PF00397	0.560
DOC_WW_Pin1_4	202	207	PF00397	0.614
DOC_WW_Pin1_4	213	218	PF00397	0.566
DOC_WW_Pin1_4	239	244	PF00397	0.782
DOC_WW_Pin1_4	251	256	PF00397	0.777
DOC_WW_Pin1_4	53	58	PF00397	0.562
LIG_14-3-3_CanoR_1	43	47	PF00244	0.540
LIG_BIR_II_1	1	5	PF00653	0.668
LIG_Clathr_ClatBox_1	116	120	PF01394	0.562
LIG_CtBP_PxDLS_1	229	233	PF00389	0.723
LIG_deltaCOP1_diTrp_1	80	83	PF00928	0.562
LIG_DLG_GKlike_1	228	236	PF00625	0.522
LIG_eIF4E_1	27	33	PF01652	0.562
LIG_FHA_1	138	144	PF00498	0.488
LIG_FHA_1	198	204	PF00498	0.685
LIG_FHA_1	240	246	PF00498	0.791
LIG_FHA_1	8	14	PF00498	0.482
LIG_FHA_1	89	95	PF00498	0.501
LIG_LIR_Apic_2	184	188	PF02991	0.476
LIG_LIR_Gen_1	80	88	PF02991	0.556
LIG_LIR_Nem_3	80	86	PF02991	0.576
LIG_LYPXL_yS_3	133	136	PF13949	0.487
LIG_SH2_CRK	63	67	PF00017	0.501
LIG_SH2_STAP1	63	67	PF00017	0.581
LIG_SH2_STAP1	8	12	PF00017	0.425
LIG_SH2_STAT3	48	51	PF00017	0.476
LIG_SH2_STAT5	146	149	PF00017	0.476
LIG_SH3_3	189	195	PF00018	0.542
LIG_SH3_3	200	206	PF00018	0.615
LIG_SH3_3	265	271	PF00018	0.751
LIG_SH3_3	28	34	PF00018	0.487
LIG_SH3_3	295	301	PF00018	0.767
LIG_SH3_3	73	79	PF00018	0.495
LIG_SUMO_SIM_anti_2	154	160	PF11976	0.539
LIG_SUMO_SIM_par_1	140	145	PF11976	0.501
LIG_SUMO_SIM_par_1	154	160	PF11976	0.430
LIG_SUMO_SIM_par_1	9	16	PF11976	0.581
LIG_TRAF2_1	307	310	PF00917	0.635
LIG_UBA3_1	158	162	PF00899	0.562
MOD_CDK_SPxK_1	53	59	PF00069	0.562
MOD_CDK_SPxxK_3	239	246	PF00069	0.566
MOD_CDK_SPxxK_3	53	60	PF00069	0.562
MOD_CK1_1	16	22	PF00069	0.568
MOD_CK1_1	215	221	PF00069	0.699
MOD_CK1_1	253	259	PF00069	0.787
MOD_CK2_1	191	197	PF00069	0.581
MOD_CK2_1	261	267	PF00069	0.774
MOD_CK2_1	304	310	PF00069	0.630
MOD_GlcNHglycan	15	18	PF01048	0.362
MOD_GlcNHglycan	200	203	PF01048	0.780
MOD_GlcNHglycan	256	259	PF01048	0.804
MOD_GlcNHglycan	263	266	PF01048	0.826
MOD_GlcNHglycan	292	296	PF01048	0.687
MOD_GlcNHglycan	306	309	PF01048	0.465
MOD_GSK3_1	134	141	PF00069	0.485
MOD_GSK3_1	191	198	PF00069	0.677
MOD_GSK3_1	249	256	PF00069	0.719
MOD_GSK3_1	283	290	PF00069	0.747
MOD_N-GLC_1	287	292	PF02516	0.795
MOD_NEK2_1	88	93	PF00069	0.562
MOD_NEK2_2	168	173	PF00069	0.482
MOD_NEK2_2	276	281	PF00069	0.723
MOD_PKA_2	304	310	PF00069	0.632
MOD_PKA_2	42	48	PF00069	0.542
MOD_Plk_4	102	108	PF00069	0.536
MOD_Plk_4	138	144	PF00069	0.485
MOD_Plk_4	33	39	PF00069	0.562
MOD_Plk_4	72	78	PF00069	0.549
MOD_Plk_4	88	94	PF00069	0.494
MOD_ProDKin_1	191	197	PF00069	0.566
MOD_ProDKin_1	202	208	PF00069	0.613
MOD_ProDKin_1	213	219	PF00069	0.566
MOD_ProDKin_1	239	245	PF00069	0.783
MOD_ProDKin_1	251	257	PF00069	0.778
MOD_ProDKin_1	53	59	PF00069	0.562
MOD_SUMO_for_1	161	164	PF00179	0.525
MOD_SUMO_rev_2	175	183	PF00179	0.470
TRG_ENDOCYTIC_2	133	136	PF00928	0.487
TRG_ENDOCYTIC_2	63	66	PF00928	0.501
TRG_NLS_MonoExtN_4	57	63	PF00514	0.562
TRG_Pf-PMV_PEXEL_1	123	127	PF00026	0.362

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P2J4	Leptomonas seymouri	70%	100%
A0A0S4IUF4	Bodo saltans	40%	98%
A0A1X0NLA2	Trypanosomatidae	42%	100%
A0A3R7LYH5	Trypanosoma rangeli	40%	100%
A4HQH0	Leishmania braziliensis	86%	100%
A4ICA6	Leishmania infantum	100%	100%
D0A3M0	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	41%	100%
E9AU83	Leishmania mexicana (strain MHOM/GT/2001/U1103)	94%	100%
Q4Q0A8	Leishmania major	96%	100%
V5BHL3	Trypanosoma cruzi	38%	100%