DNA-binding_protein_putative/GeneDB:LmjF.36.6880

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

Bromodomain factor 1

Species:

Leishmania donovani

UniProt:

A0A3Q8IM77_LEIDO

TriTrypDb:

LdBPK_367210.1 , LdCL_360084700 , LDHU3_36.9580

Length:

286

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0000785	chromatin	2	1
GO:0005634	nucleus	5	1
GO:0043226	organelle	2	1
GO:0043227	membrane-bounded organelle	3	1
GO:0043229	intracellular organelle	3	1
GO:0043231	intracellular membrane-bounded organelle	4	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

A0A3Q8IM77

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IM77

Function

Biological processes
Term	Name	Level	Count
GO:0006325	chromatin organization	4	1
GO:0006338	chromatin remodeling	5	1
GO:0006355	regulation of DNA-templated transcription	6	1
GO:0009889	regulation of biosynthetic process	4	1
GO:0009987	cellular process	1	1
GO:0010468	regulation of gene expression	5	1
GO:0010556	regulation of macromolecule biosynthetic process	5	1
GO:0016043	cellular component organization	3	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	5	1
GO:0019222	regulation of metabolic process	3	1
GO:0031323	regulation of cellular metabolic process	4	1
GO:0031326	regulation of cellular biosynthetic process	5	1
GO:0050789	regulation of biological process	2	1
GO:0050794	regulation of cellular process	3	1
GO:0051171	regulation of nitrogen compound metabolic process	4	1
GO:0051252	regulation of RNA metabolic process	5	1
GO:0060255	regulation of macromolecule metabolic process	4	1
GO:0065007	biological regulation	1	1
GO:0071840	cellular component organization or biogenesis	2	1
GO:0080090	regulation of primary metabolic process	4	1
GO:1903506	regulation of nucleic acid-templated transcription	7	1
GO:2001141	regulation of RNA biosynthetic process	6	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	10
GO:0003677	DNA binding	4	10
GO:0005488	binding	1	10
GO:0097159	organic cyclic compound binding	2	10
GO:1901363	heterocyclic compound binding	2	10
GO:0005515	protein binding	2	1
GO:0042393	histone binding	3	1
GO:0070577	lysine-acetylated histone binding	4	1
GO:0140030	modification-dependent protein binding	3	1
GO:0140033	acetylation-dependent protein binding	4	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	147	151	PF00656	0.429
CLV_NRD_NRD_1	186	188	PF00675	0.356
CLV_NRD_NRD_1	19	21	PF00675	0.440
CLV_NRD_NRD_1	206	208	PF00675	0.581
CLV_NRD_NRD_1	219	221	PF00675	0.549
CLV_NRD_NRD_1	36	38	PF00675	0.185
CLV_NRD_NRD_1	75	77	PF00675	0.303
CLV_PCSK_FUR_1	15	19	PF00082	0.380
CLV_PCSK_FUR_1	217	221	PF00082	0.383
CLV_PCSK_KEX2_1	17	19	PF00082	0.389
CLV_PCSK_KEX2_1	186	188	PF00082	0.355
CLV_PCSK_KEX2_1	206	208	PF00082	0.553
CLV_PCSK_KEX2_1	217	219	PF00082	0.545
CLV_PCSK_KEX2_1	36	38	PF00082	0.425
CLV_PCSK_PC1ET2_1	17	19	PF00082	0.398
CLV_PCSK_PC7_1	13	19	PF00082	0.408
CLV_PCSK_PC7_1	213	219	PF00082	0.567
CLV_PCSK_SKI1_1	124	128	PF00082	0.465
CLV_PCSK_SKI1_1	152	156	PF00082	0.448
CLV_PCSK_SKI1_1	178	182	PF00082	0.436
CLV_PCSK_SKI1_1	186	190	PF00082	0.364
CLV_PCSK_SKI1_1	201	205	PF00082	0.582
CLV_PCSK_SKI1_1	207	211	PF00082	0.594
CLV_Separin_Metazoa	153	157	PF03568	0.477
DOC_MAPK_MEF2A_6	112	121	PF00069	0.425
DOC_USP7_MATH_1	192	196	PF00917	0.496
DOC_USP7_MATH_1	209	213	PF00917	0.519
DOC_USP7_MATH_1	255	259	PF00917	0.643
DOC_WW_Pin1_4	261	266	PF00397	0.555
LIG_14-3-3_CanoR_1	124	133	PF00244	0.422
LIG_14-3-3_CanoR_1	178	188	PF00244	0.461
LIG_14-3-3_CanoR_1	53	59	PF00244	0.447
LIG_Actin_WH2_2	114	132	PF00022	0.481
LIG_Actin_WH2_2	162	180	PF00022	0.506
LIG_BIR_II_1	1	5	PF00653	0.542
LIG_deltaCOP1_diTrp_1	269	280	PF00928	0.661
LIG_FHA_1	114	120	PF00498	0.385
LIG_FHA_2	83	89	PF00498	0.284
LIG_GBD_Chelix_1	8	16	PF00786	0.428
LIG_PDZ_Class_1	281	286	PF00595	0.499
LIG_PTB_Apo_2	95	102	PF02174	0.405
LIG_PTB_Phospho_1	95	101	PF10480	0.405
LIG_SH2_CRK	103	107	PF00017	0.411
LIG_SH2_SRC	26	29	PF00017	0.516
LIG_SH2_STAP1	61	65	PF00017	0.325
LIG_SH2_STAT5	101	104	PF00017	0.322
LIG_SH2_STAT5	26	29	PF00017	0.516
LIG_SH3_1	130	136	PF00018	0.524
LIG_SH3_3	130	136	PF00018	0.433
LIG_SH3_3	62	68	PF00018	0.325
MOD_CDC14_SPxK_1	264	267	PF00782	0.670
MOD_CDK_SPxK_1	261	267	PF00069	0.678
MOD_CK1_1	148	154	PF00069	0.417
MOD_CK1_1	212	218	PF00069	0.482
MOD_CK2_1	191	197	PF00069	0.535
MOD_CK2_1	255	261	PF00069	0.665
MOD_GlcNHglycan	147	150	PF01048	0.521
MOD_GlcNHglycan	181	184	PF01048	0.423
MOD_GlcNHglycan	194	197	PF01048	0.453
MOD_GSK3_1	141	148	PF00069	0.555
MOD_N-GLC_2	98	100	PF02516	0.411
MOD_NEK2_1	280	285	PF00069	0.529
MOD_PKA_2	192	198	PF00069	0.556
MOD_PKA_2	212	218	PF00069	0.611
MOD_Plk_2-3	40	46	PF00069	0.331
MOD_Plk_4	165	171	PF00069	0.546
MOD_Plk_4	255	261	PF00069	0.610
MOD_ProDKin_1	261	267	PF00069	0.554
MOD_SUMO_rev_2	194	203	PF00179	0.545
TRG_ENDOCYTIC_2	103	106	PF00928	0.411
TRG_ENDOCYTIC_2	161	164	PF00928	0.514
TRG_ENDOCYTIC_2	70	73	PF00928	0.320
TRG_ER_diArg_1	12	15	PF00400	0.406
TRG_ER_diArg_1	18	20	PF00400	0.399
TRG_ER_diArg_1	185	187	PF00400	0.382
TRG_ER_diArg_1	205	207	PF00400	0.561
TRG_ER_diArg_1	217	220	PF00400	0.536
TRG_ER_diArg_1	36	38	PF00400	0.145
TRG_NLS_MonoCore_2	16	21	PF00514	0.436
TRG_NLS_MonoExtC_3	16	22	PF00514	0.435
TRG_NLS_MonoExtN_4	15	21	PF00514	0.541
TRG_Pf-PMV_PEXEL_1	36	40	PF00026	0.402

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1PD97	Leptomonas seymouri	74%	100%
A0A0S4KI88	Bodo saltans	26%	100%
A0A1X0NN00	Trypanosomatidae	37%	96%
A0A422NVW8	Trypanosoma rangeli	35%	97%
A4HQK9	Leishmania braziliensis	86%	100%
A4ICC9	Leishmania infantum	100%	100%
D0A3R1	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	38%	95%
E9AUC4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	93%	100%
Q4Q066	Leishmania major	94%	100%
V5DDW0	Trypanosoma cruzi	34%	97%