CCR4-NOT transcription complex subunit 10, putative

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

CCR4-NOT transcription complex subunit 10, putative

Species:

Leishmania donovani

UniProt:

A0A3Q8IJX9_LEIDO

TriTrypDb:

LdBPK_366360.1 , LdCL_360071000 , LDHU3_36.8440

Length:

557

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	yes	yes: 20

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 11
NetGPI	no	yes: 0, no: 11

Cellular components
Term	Name	Level	Count
GO:0030014	CCR4-NOT complex	3	12
GO:0032991	protein-containing complex	1	12
GO:0140535	intracellular protein-containing complex	2	12
GO:0005737	cytoplasm	2	1
GO:0031974	membrane-enclosed lumen	2	1
GO:0031981	nuclear lumen	5	1
GO:0032838	plasma membrane bounded cell projection cytoplasm	4	1
GO:0043233	organelle lumen	3	1
GO:0070013	intracellular organelle lumen	4	1
GO:0097014	ciliary plasm	5	1
GO:0099568	cytoplasmic region	3	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

A0A3Q8IJX9

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IJX9

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	1
GO:0006401	RNA catabolic process	5	1
GO:0006402	mRNA catabolic process	6	1
GO:0006417	regulation of translation	6	1
GO:0006725	cellular aromatic compound metabolic process	3	1
GO:0006807	nitrogen compound metabolic process	2	1
GO:0008152	metabolic process	1	1
GO:0009056	catabolic process	2	1
GO:0009057	macromolecule catabolic process	4	1
GO:0009889	regulation of biosynthetic process	4	1
GO:0009890	negative regulation of biosynthetic process	5	1
GO:0009892	negative regulation of metabolic process	4	1
GO:0009987	cellular process	1	1
GO:0010468	regulation of gene expression	5	1
GO:0010556	regulation of macromolecule biosynthetic process	5	1
GO:0010558	negative regulation of macromolecule biosynthetic process	6	1
GO:0010605	negative regulation of macromolecule metabolic process	5	1
GO:0010608	post-transcriptional regulation of gene expression	6	1
GO:0010629	negative regulation of gene expression	6	1
GO:0016070	RNA metabolic process	5	1
GO:0016071	mRNA metabolic process	6	1
GO:0017148	negative regulation of translation	7	1
GO:0019222	regulation of metabolic process	3	1
GO:0019439	aromatic compound catabolic process	4	1
GO:0031323	regulation of cellular metabolic process	4	1
GO:0031324	negative regulation of cellular metabolic process	5	1
GO:0031326	regulation of cellular biosynthetic process	5	1
GO:0031327	negative regulation of cellular biosynthetic process	6	1
GO:0034248	regulation of amide metabolic process	5	1
GO:0034249	negative regulation of amide metabolic process	6	1
GO:0034641	cellular nitrogen compound metabolic process	3	1
GO:0034655	nucleobase-containing compound catabolic process	4	1
GO:0043170	macromolecule metabolic process	3	1
GO:0044237	cellular metabolic process	2	1
GO:0044238	primary metabolic process	2	1
GO:0044248	cellular catabolic process	3	1
GO:0044260	obsolete cellular macromolecule metabolic process	3	1
GO:0044265	obsolete cellular macromolecule catabolic process	4	1
GO:0044270	cellular nitrogen compound catabolic process	4	1
GO:0046483	heterocycle metabolic process	3	1
GO:0046700	heterocycle catabolic process	4	1
GO:0048519	negative regulation of biological process	3	1
GO:0048523	negative regulation of cellular process	4	1
GO:0050789	regulation of biological process	2	1
GO:0050794	regulation of cellular process	3	1
GO:0051171	regulation of nitrogen compound metabolic process	4	1
GO:0051172	negative regulation of nitrogen compound metabolic process	5	1
GO:0051246	regulation of protein metabolic process	5	1
GO:0051248	negative regulation of protein metabolic process	6	1
GO:0060255	regulation of macromolecule metabolic process	4	1
GO:0065007	biological regulation	1	1
GO:0071704	organic substance metabolic process	2	1
GO:0080090	regulation of primary metabolic process	4	1
GO:0090304	nucleic acid metabolic process	4	1
GO:1901360	organic cyclic compound metabolic process	3	1
GO:1901361	organic cyclic compound catabolic process	4	1
GO:1901575	organic substance catabolic process	3	1
GO:2000112	obsolete regulation of cellular macromolecule biosynthetic process	6	1
GO:2000113	obsolete negative regulation of cellular macromolecule biosynthetic process	7	1

Could not find GO molecular_function term for this entry.

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	111	113	PF00675	0.617
CLV_NRD_NRD_1	139	141	PF00675	0.765
CLV_NRD_NRD_1	294	296	PF00675	0.652
CLV_NRD_NRD_1	298	300	PF00675	0.693
CLV_NRD_NRD_1	401	403	PF00675	0.565
CLV_NRD_NRD_1	453	455	PF00675	0.581
CLV_NRD_NRD_1	505	507	PF00675	0.669
CLV_PCSK_KEX2_1	111	113	PF00082	0.617
CLV_PCSK_KEX2_1	298	300	PF00082	0.653
CLV_PCSK_KEX2_1	401	403	PF00082	0.641
CLV_PCSK_KEX2_1	453	455	PF00082	0.581
CLV_PCSK_SKI1_1	111	115	PF00082	0.495
CLV_PCSK_SKI1_1	13	17	PF00082	0.566
CLV_PCSK_SKI1_1	140	144	PF00082	0.610
CLV_PCSK_SKI1_1	348	352	PF00082	0.694
CLV_PCSK_SKI1_1	447	451	PF00082	0.530
DEG_APCC_DBOX_1	453	461	PF00400	0.577
DEG_SPOP_SBC_1	158	162	PF00917	0.486
DOC_ANK_TNKS_1	61	68	PF00023	0.740
DOC_CDC14_PxL_1	166	174	PF14671	0.673
DOC_MAPK_gen_1	474	482	PF00069	0.640
DOC_MAPK_MEF2A_6	476	484	PF00069	0.526
DOC_PP1_RVXF_1	550	556	PF00149	0.591
DOC_PP2B_LxvP_1	365	368	PF13499	0.513
DOC_USP7_MATH_1	181	185	PF00917	0.546
DOC_USP7_MATH_1	285	289	PF00917	0.538
DOC_USP7_MATH_1	338	342	PF00917	0.746
DOC_USP7_MATH_1	422	426	PF00917	0.615
DOC_USP7_MATH_1	472	476	PF00917	0.626
DOC_USP7_UBL2_3	137	141	PF12436	0.762
DOC_WW_Pin1_4	517	522	PF00397	0.729
LIG_14-3-3_CanoR_1	304	310	PF00244	0.735
LIG_14-3-3_CanoR_1	453	458	PF00244	0.584
LIG_Actin_WH2_2	151	169	PF00022	0.677
LIG_APCC_ABBA_1	532	537	PF00400	0.508
LIG_BRCT_BRCA1_1	220	224	PF00533	0.510
LIG_BRCT_BRCA1_1	274	278	PF00533	0.476
LIG_BRCT_BRCA1_2	220	226	PF00533	0.506
LIG_deltaCOP1_diTrp_1	548	555	PF00928	0.679
LIG_DLG_GKlike_1	453	460	PF00625	0.581
LIG_EH1_1	433	441	PF00400	0.497
LIG_eIF4E_1	434	440	PF01652	0.492
LIG_FHA_1	134	140	PF00498	0.640
LIG_FHA_1	344	350	PF00498	0.698
LIG_FHA_1	354	360	PF00498	0.625
LIG_FHA_1	428	434	PF00498	0.567
LIG_FHA_2	66	72	PF00498	0.821
LIG_GBD_Chelix_1	44	52	PF00786	0.579
LIG_IRF3_LxIS_1	480	487	PF10401	0.651
LIG_LIR_Gen_1	264	272	PF02991	0.534
LIG_LIR_Gen_1	308	313	PF02991	0.645
LIG_LIR_Gen_1	320	330	PF02991	0.626
LIG_LIR_Gen_1	372	381	PF02991	0.627
LIG_LIR_Gen_1	478	489	PF02991	0.521
LIG_LIR_Gen_1	533	539	PF02991	0.598
LIG_LIR_Nem_3	264	268	PF02991	0.535
LIG_LIR_Nem_3	323	327	PF02991	0.596
LIG_LIR_Nem_3	372	376	PF02991	0.582
LIG_LIR_Nem_3	478	484	PF02991	0.519
LIG_LIR_Nem_3	533	538	PF02991	0.590
LIG_NRBOX	249	255	PF00104	0.529
LIG_PCNA_yPIPBox_3	199	213	PF02747	0.572
LIG_PCNA_yPIPBox_3	242	254	PF02747	0.546
LIG_PCNA_yPIPBox_3	37	48	PF02747	0.621
LIG_PTB_Apo_2	318	325	PF02174	0.632
LIG_PTB_Apo_2	358	365	PF02174	0.576
LIG_SH2_CRK	389	393	PF00017	0.529
LIG_SH2_GRB2like	203	206	PF00017	0.476
LIG_SH2_GRB2like	319	322	PF00017	0.747
LIG_SH2_NCK_1	21	25	PF00017	0.625
LIG_SH2_NCK_1	509	513	PF00017	0.728
LIG_SH2_SRC	21	24	PF00017	0.657
LIG_SH2_STAP1	127	131	PF00017	0.568
LIG_SH2_STAP1	389	393	PF00017	0.523
LIG_SH2_STAT3	302	305	PF00017	0.725
LIG_SH2_STAT5	203	206	PF00017	0.461
LIG_SH2_STAT5	434	437	PF00017	0.561
LIG_SH2_STAT5	47	50	PF00017	0.633
LIG_SH2_STAT5	519	522	PF00017	0.706
LIG_SH2_STAT5	529	532	PF00017	0.556
LIG_SH3_3	330	336	PF00018	0.743
LIG_SH3_4	137	144	PF00018	0.688
LIG_SH3_4	234	241	PF00018	0.726
LIG_TRAF2_1	381	384	PF00917	0.632
LIG_TRAF2_1	410	413	PF00917	0.630
LIG_TRFH_1	324	328	PF08558	0.692
LIG_TRFH_1	364	368	PF08558	0.590
LIG_TYR_ITIM	387	392	PF00017	0.541
LIG_UBA3_1	131	137	PF00899	0.653
LIG_UBA3_1	363	369	PF00899	0.636
LIG_UBA3_1	500	507	PF00899	0.649
MOD_CDK_SPxK_1	517	523	PF00069	0.724
MOD_CK1_1	144	150	PF00069	0.766
MOD_CK1_1	157	163	PF00069	0.542
MOD_CK1_1	329	335	PF00069	0.721
MOD_CK1_1	456	462	PF00069	0.587
MOD_CK2_1	158	164	PF00069	0.572
MOD_CK2_1	208	214	PF00069	0.578
MOD_CK2_1	317	323	PF00069	0.734
MOD_CK2_1	338	344	PF00069	0.758
MOD_CK2_1	372	378	PF00069	0.553
MOD_CK2_1	472	478	PF00069	0.607
MOD_CK2_1	496	502	PF00069	0.552
MOD_GlcNHglycan	182	186	PF01048	0.625
MOD_GlcNHglycan	274	277	PF01048	0.597
MOD_GlcNHglycan	309	312	PF01048	0.661
MOD_GlcNHglycan	314	317	PF01048	0.659
MOD_GlcNHglycan	328	331	PF01048	0.661
MOD_GlcNHglycan	63	66	PF01048	0.708
MOD_GlcNHglycan	99	102	PF01048	0.519
MOD_GSK3_1	121	128	PF00069	0.553
MOD_GSK3_1	140	147	PF00069	0.519
MOD_GSK3_1	154	161	PF00069	0.567
MOD_GSK3_1	268	275	PF00069	0.587
MOD_GSK3_1	339	346	PF00069	0.707
MOD_GSK3_1	455	462	PF00069	0.569
MOD_GSK3_1	484	491	PF00069	0.569
MOD_GSK3_1	496	503	PF00069	0.461
MOD_GSK3_1	513	520	PF00069	0.690
MOD_GSK3_1	61	68	PF00069	0.707
MOD_N-GLC_1	482	487	PF02516	0.585
MOD_NEK2_1	125	130	PF00069	0.496
MOD_NEK2_1	131	136	PF00069	0.527
MOD_NEK2_1	154	159	PF00069	0.661
MOD_NEK2_1	175	180	PF00069	0.542
MOD_NEK2_1	272	277	PF00069	0.553
MOD_NEK2_1	312	317	PF00069	0.687
MOD_NEK2_1	397	402	PF00069	0.600
MOD_NEK2_1	427	432	PF00069	0.602
MOD_NEK2_1	484	489	PF00069	0.520
MOD_NEK2_1	490	495	PF00069	0.572
MOD_NEK2_1	551	556	PF00069	0.664
MOD_OFUCOSY	282	289	PF10250	0.611
MOD_PKA_1	140	146	PF00069	0.742
MOD_PKA_1	453	459	PF00069	0.586
MOD_PKA_2	144	150	PF00069	0.684
MOD_PKA_2	453	459	PF00069	0.588
MOD_PKA_2	522	528	PF00069	0.676
MOD_PKA_2	61	67	PF00069	0.727
MOD_Plk_1	482	488	PF00069	0.607
MOD_Plk_4	121	127	PF00069	0.550
MOD_Plk_4	154	160	PF00069	0.654
MOD_Plk_4	372	378	PF00069	0.593
MOD_Plk_4	427	433	PF00069	0.547
MOD_Plk_4	456	462	PF00069	0.600
MOD_Plk_4	496	502	PF00069	0.533
MOD_Plk_4	522	528	PF00069	0.663
MOD_ProDKin_1	517	523	PF00069	0.724
MOD_SUMO_for_1	225	228	PF00179	0.498
MOD_SUMO_rev_2	211	217	PF00179	0.624
MOD_SUMO_rev_2	34	38	PF00179	0.629
TRG_DiLeu_BaEn_1	105	110	PF01217	0.600
TRG_DiLeu_BaEn_1	171	176	PF01217	0.603
TRG_ENDOCYTIC_2	319	322	PF00928	0.776
TRG_ENDOCYTIC_2	389	392	PF00928	0.524
TRG_ENDOCYTIC_2	529	532	PF00928	0.494
TRG_ER_diArg_1	110	112	PF00400	0.619
TRG_ER_diArg_1	452	454	PF00400	0.573
TRG_ER_diArg_1	474	477	PF00400	0.662
TRG_NLS_MonoExtC_3	294	299	PF00514	0.692
TRG_Pf-PMV_PEXEL_1	111	115	PF00026	0.615
TRG_Pf-PMV_PEXEL_1	46	51	PF00026	0.638
TRG_Pf-PMV_PEXEL_1	506	510	PF00026	0.690

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P8Z8	Leptomonas seymouri	79%	100%
A0A0S4ILH8	Bodo saltans	28%	100%
A0A1X0NLF6	Trypanosomatidae	48%	99%
A0A422NJ69	Trypanosoma rangeli	48%	99%
A4HQC9	Leishmania braziliensis	90%	100%
A4IE22	Leishmania infantum	100%	100%
D0A3X0	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	44%	100%
E9AU45	Leishmania mexicana (strain MHOM/GT/2001/U1103)	97%	100%
Q4Q0F0	Leishmania major	97%	100%
V5BT61	Trypanosoma cruzi	48%	99%