DNA-repair_protein_putative/GeneDB:LmjF.35.3450

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

DNA-repair protein, putative

Species:

Leishmania donovani

UniProt:

A0A3Q8IJN2_LEIDO

TriTrypDb:

LdBPK_353500.1 , LdCL_350040000 , LDHU3_35.4580

Length:

840

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 9
NetGPI	no	yes: 0, no: 9

Cellular components
Term	Name	Level	Count
GO:0005634	nucleus	5	9
GO:0043226	organelle	2	9
GO:0043227	membrane-bounded organelle	3	9
GO:0043229	intracellular organelle	3	9
GO:0043231	intracellular membrane-bounded organelle	4	9
GO:0110165	cellular anatomical entity	1	10
GO:0000109	nucleotide-excision repair complex	3	1
GO:0000111	nucleotide-excision repair factor 2 complex	4	1
GO:0005737	cytoplasm	2	1
GO:0032991	protein-containing complex	1	1
GO:0071942	XPC complex	4	1
GO:0140513	nuclear protein-containing complex	2	1

Expansion

Sequence features

A0A3Q8IJN2

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IJN2

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	10
GO:0006259	DNA metabolic process	4	10
GO:0006281	DNA repair	5	10
GO:0006289	nucleotide-excision repair	6	10
GO:0006725	cellular aromatic compound metabolic process	3	10
GO:0006807	nitrogen compound metabolic process	2	10
GO:0006950	response to stress	2	10
GO:0006974	DNA damage response	4	10
GO:0008152	metabolic process	1	10
GO:0009987	cellular process	1	10
GO:0033554	cellular response to stress	3	10
GO:0034641	cellular nitrogen compound metabolic process	3	10
GO:0043170	macromolecule metabolic process	3	10
GO:0044237	cellular metabolic process	2	10
GO:0044238	primary metabolic process	2	10
GO:0044260	obsolete cellular macromolecule metabolic process	3	10
GO:0046483	heterocycle metabolic process	3	10
GO:0050896	response to stimulus	1	10
GO:0051716	cellular response to stimulus	2	10
GO:0071704	organic substance metabolic process	2	10
GO:0090304	nucleic acid metabolic process	4	10
GO:1901360	organic cyclic compound metabolic process	3	10
GO:0006298	mismatch repair	6	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	10
GO:0003677	DNA binding	4	10
GO:0003684	damaged DNA binding	5	10
GO:0005488	binding	1	10
GO:0097159	organic cyclic compound binding	2	10
GO:1901363	heterocyclic compound binding	2	10
GO:0003697	single-stranded DNA binding	5	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	400	404	PF00656	0.798
CLV_C14_Caspase3-7	460	464	PF00656	0.508
CLV_C14_Caspase3-7	52	56	PF00656	0.504
CLV_NRD_NRD_1	159	161	PF00675	0.539
CLV_NRD_NRD_1	245	247	PF00675	0.641
CLV_NRD_NRD_1	415	417	PF00675	0.556
CLV_NRD_NRD_1	429	431	PF00675	0.491
CLV_NRD_NRD_1	534	536	PF00675	0.330
CLV_NRD_NRD_1	741	743	PF00675	0.263
CLV_NRD_NRD_1	757	759	PF00675	0.301
CLV_NRD_NRD_1	763	765	PF00675	0.262
CLV_NRD_NRD_1	803	805	PF00675	0.329
CLV_PCSK_FUR_1	427	431	PF00082	0.534
CLV_PCSK_KEX2_1	158	160	PF00082	0.542
CLV_PCSK_KEX2_1	209	211	PF00082	0.721
CLV_PCSK_KEX2_1	415	417	PF00082	0.558
CLV_PCSK_KEX2_1	429	431	PF00082	0.488
CLV_PCSK_KEX2_1	449	451	PF00082	0.330
CLV_PCSK_KEX2_1	534	536	PF00082	0.314
CLV_PCSK_KEX2_1	641	643	PF00082	0.273
CLV_PCSK_KEX2_1	741	743	PF00082	0.263
CLV_PCSK_KEX2_1	756	758	PF00082	0.295
CLV_PCSK_KEX2_1	763	765	PF00082	0.265
CLV_PCSK_KEX2_1	802	804	PF00082	0.325
CLV_PCSK_KEX2_1	822	824	PF00082	0.235
CLV_PCSK_PC1ET2_1	158	160	PF00082	0.623
CLV_PCSK_PC1ET2_1	209	211	PF00082	0.725
CLV_PCSK_PC1ET2_1	429	431	PF00082	0.499
CLV_PCSK_PC1ET2_1	449	451	PF00082	0.330
CLV_PCSK_PC1ET2_1	641	643	PF00082	0.273
CLV_PCSK_PC1ET2_1	802	804	PF00082	0.317
CLV_PCSK_PC1ET2_1	822	824	PF00082	0.235
CLV_PCSK_PC7_1	637	643	PF00082	0.267
CLV_PCSK_SKI1_1	152	156	PF00082	0.643
CLV_PCSK_SKI1_1	192	196	PF00082	0.518
CLV_PCSK_SKI1_1	373	377	PF00082	0.347
CLV_PCSK_SKI1_1	60	64	PF00082	0.742
CLV_PCSK_SKI1_1	659	663	PF00082	0.404
CLV_PCSK_SKI1_1	741	745	PF00082	0.310
CLV_Separin_Metazoa	560	564	PF03568	0.502
DEG_APCC_DBOX_1	414	422	PF00400	0.731
DEG_APCC_DBOX_1	605	613	PF00400	0.444
DEG_SPOP_SBC_1	289	293	PF00917	0.495
DEG_SPOP_SBC_1	571	575	PF00917	0.467
DEG_SPOP_SBC_1	86	90	PF00917	0.474
DEG_SPOP_SBC_1	97	101	PF00917	0.429
DOC_CYCLIN_yClb1_LxF_4	321	326	PF00134	0.292
DOC_CYCLIN_yCln2_LP_2	283	289	PF00134	0.361
DOC_CYCLIN_yCln2_LP_2	346	352	PF00134	0.364
DOC_MAPK_gen_1	192	202	PF00069	0.328
DOC_MAPK_gen_1	415	423	PF00069	0.693
DOC_MAPK_gen_1	641	648	PF00069	0.447
DOC_MAPK_gen_1	738	747	PF00069	0.447
DOC_MAPK_HePTP_8	262	274	PF00069	0.324
DOC_MAPK_MEF2A_6	195	202	PF00069	0.321
DOC_MAPK_MEF2A_6	265	274	PF00069	0.317
DOC_MAPK_MEF2A_6	738	747	PF00069	0.447
DOC_MAPK_NFAT4_5	195	203	PF00069	0.328
DOC_PP1_RVXF_1	180	186	PF00149	0.338
DOC_PP1_RVXF_1	321	327	PF00149	0.285
DOC_PP1_RVXF_1	742	748	PF00149	0.530
DOC_PP2B_LxvP_1	283	286	PF13499	0.359
DOC_PP2B_LxvP_1	344	347	PF13499	0.331
DOC_PP4_FxxP_1	680	683	PF00568	0.595
DOC_USP7_MATH_1	113	117	PF00917	0.542
DOC_USP7_MATH_1	208	212	PF00917	0.492
DOC_USP7_MATH_1	289	293	PF00917	0.537
DOC_USP7_MATH_1	494	498	PF00917	0.467
DOC_USP7_MATH_1	571	575	PF00917	0.530
DOC_USP7_MATH_1	644	648	PF00917	0.536
DOC_USP7_MATH_1	681	685	PF00917	0.596
DOC_WW_Pin1_4	204	209	PF00397	0.438
DOC_WW_Pin1_4	294	299	PF00397	0.524
DOC_WW_Pin1_4	41	46	PF00397	0.525
DOC_WW_Pin1_4	516	521	PF00397	0.460
LIG_14-3-3_CanoR_1	159	167	PF00244	0.426
LIG_14-3-3_CanoR_1	246	251	PF00244	0.367
LIG_14-3-3_CanoR_1	337	344	PF00244	0.430
LIG_14-3-3_CanoR_1	563	567	PF00244	0.546
LIG_14-3-3_CanoR_1	586	592	PF00244	0.524
LIG_14-3-3_CanoR_1	659	669	PF00244	0.574
LIG_14-3-3_CanoR_1	689	694	PF00244	0.605
LIG_14-3-3_CanoR_1	713	717	PF00244	0.549
LIG_Actin_WH2_2	641	658	PF00022	0.495
LIG_BIR_II_1	1	5	PF00653	0.500
LIG_BIR_III_2	517	521	PF00653	0.530
LIG_BRCT_BRCA1_1	352	356	PF00533	0.353
LIG_BRCT_BRCA1_1	676	680	PF00533	0.565
LIG_Clathr_ClatBox_1	106	110	PF01394	0.536
LIG_deltaCOP1_diTrp_1	480	489	PF00928	0.465
LIG_FHA_1	14	20	PF00498	0.485
LIG_FHA_1	230	236	PF00498	0.370
LIG_FHA_1	505	511	PF00498	0.447
LIG_FHA_1	553	559	PF00498	0.558
LIG_FHA_1	563	569	PF00498	0.543
LIG_FHA_1	571	577	PF00498	0.526
LIG_FHA_1	777	783	PF00498	0.504
LIG_FHA_2	18	24	PF00498	0.545
LIG_FHA_2	375	381	PF00498	0.636
LIG_FHA_2	699	705	PF00498	0.605
LIG_FHA_2	88	94	PF00498	0.549
LIG_GBD_Chelix_1	175	183	PF00786	0.542
LIG_LIR_Apic_2	316	321	PF02991	0.365
LIG_LIR_Apic_2	677	683	PF02991	0.598
LIG_LIR_Gen_1	122	129	PF02991	0.491
LIG_LIR_Gen_1	142	149	PF02991	0.356
LIG_LIR_Gen_1	169	179	PF02991	0.348
LIG_LIR_Gen_1	221	231	PF02991	0.339
LIG_LIR_Gen_1	32	42	PF02991	0.467
LIG_LIR_Gen_1	353	363	PF02991	0.321
LIG_LIR_Gen_1	475	484	PF02991	0.454
LIG_LIR_Gen_1	487	494	PF02991	0.430
LIG_LIR_Gen_1	714	725	PF02991	0.447
LIG_LIR_Gen_1	789	795	PF02991	0.591
LIG_LIR_LC3C_4	366	371	PF02991	0.400
LIG_LIR_Nem_3	122	126	PF02991	0.528
LIG_LIR_Nem_3	169	175	PF02991	0.352
LIG_LIR_Nem_3	221	227	PF02991	0.334
LIG_LIR_Nem_3	279	284	PF02991	0.304
LIG_LIR_Nem_3	32	37	PF02991	0.466
LIG_LIR_Nem_3	353	359	PF02991	0.321
LIG_LIR_Nem_3	475	481	PF02991	0.483
LIG_LIR_Nem_3	487	492	PF02991	0.476
LIG_LIR_Nem_3	692	698	PF02991	0.565
LIG_LIR_Nem_3	714	720	PF02991	0.447
LIG_LIR_Nem_3	789	794	PF02991	0.509
LIG_NBox_RRM_1	226	236	PF00076	0.353
LIG_NRBOX	170	176	PF00104	0.350
LIG_Pex14_1	502	506	PF04695	0.465
LIG_Pex14_2	352	356	PF04695	0.344
LIG_PTB_Apo_2	275	282	PF02174	0.332
LIG_SH2_CRK	669	673	PF00017	0.553
LIG_SH2_NCK_1	304	308	PF00017	0.469
LIG_SH2_NCK_1	526	530	PF00017	0.447
LIG_SH2_PTP2	224	227	PF00017	0.362
LIG_SH2_PTP2	717	720	PF00017	0.447
LIG_SH2_SRC	530	533	PF00017	0.515
LIG_SH2_STAP1	145	149	PF00017	0.339
LIG_SH2_STAP1	506	510	PF00017	0.447
LIG_SH2_STAP1	526	530	PF00017	0.355
LIG_SH2_STAP1	593	597	PF00017	0.447
LIG_SH2_STAP1	788	792	PF00017	0.579
LIG_SH2_STAT5	224	227	PF00017	0.362
LIG_SH2_STAT5	304	307	PF00017	0.455
LIG_SH2_STAT5	351	354	PF00017	0.308
LIG_SH2_STAT5	506	509	PF00017	0.462
LIG_SH2_STAT5	522	525	PF00017	0.510
LIG_SH2_STAT5	610	613	PF00017	0.530
LIG_SH2_STAT5	717	720	PF00017	0.447
LIG_SH3_3	283	289	PF00018	0.460
LIG_SH3_3	303	309	PF00018	0.471
LIG_SH3_3	34	40	PF00018	0.455
LIG_SH3_3	565	571	PF00018	0.502
LIG_SH3_3	668	674	PF00018	0.534
LIG_SH3_3	691	697	PF00018	0.534
LIG_SH3_3	7	13	PF00018	0.558
LIG_SH3_3	703	709	PF00018	0.579
LIG_SUMO_SIM_anti_2	778	786	PF11976	0.502
LIG_SUMO_SIM_par_1	419	425	PF11976	0.663
LIG_SUMO_SIM_par_1	505	511	PF11976	0.502
LIG_SUMO_SIM_par_1	643	650	PF11976	0.544
LIG_TRAF2_1	787	790	PF00917	0.539
LIG_UBA3_1	273	282	PF00899	0.407
LIG_UBA3_1	818	822	PF00899	0.492
MOD_CDC14_SPxK_1	207	210	PF00782	0.486
MOD_CDC14_SPxK_1	44	47	PF00782	0.601
MOD_CDK_SPK_2	204	209	PF00069	0.466
MOD_CDK_SPK_2	516	521	PF00069	0.284
MOD_CDK_SPxK_1	204	210	PF00069	0.471
MOD_CDK_SPxK_1	41	47	PF00069	0.598
MOD_CDK_SPxxK_3	41	48	PF00069	0.598
MOD_CK1_1	132	138	PF00069	0.582
MOD_CK1_1	240	246	PF00069	0.474
MOD_CK1_1	316	322	PF00069	0.454
MOD_CK1_1	433	439	PF00069	0.728
MOD_CK1_1	454	460	PF00069	0.236
MOD_CK1_1	488	494	PF00069	0.386
MOD_CK1_1	497	503	PF00069	0.336
MOD_CK1_1	524	530	PF00069	0.353
MOD_CK1_1	647	653	PF00069	0.422
MOD_CK1_1	660	666	PF00069	0.466
MOD_CK2_1	208	214	PF00069	0.716
MOD_CK2_1	290	296	PF00069	0.769
MOD_CK2_1	374	380	PF00069	0.533
MOD_CK2_1	419	425	PF00069	0.654
MOD_CK2_1	87	93	PF00069	0.658
MOD_CK2_1	98	104	PF00069	0.691
MOD_Cter_Amidation	532	535	PF01082	0.400
MOD_GlcNHglycan	214	219	PF01048	0.607
MOD_GlcNHglycan	221	224	PF01048	0.458
MOD_GlcNHglycan	266	269	PF01048	0.366
MOD_GlcNHglycan	292	295	PF01048	0.618
MOD_GlcNHglycan	299	302	PF01048	0.523
MOD_GlcNHglycan	309	312	PF01048	0.596
MOD_GlcNHglycan	338	341	PF01048	0.623
MOD_GlcNHglycan	438	441	PF01048	0.739
MOD_GlcNHglycan	453	456	PF01048	0.396
MOD_GlcNHglycan	482	485	PF01048	0.420
MOD_GlcNHglycan	5	8	PF01048	0.681
MOD_GlcNHglycan	510	513	PF01048	0.342
MOD_GlcNHglycan	601	604	PF01048	0.313
MOD_GlcNHglycan	642	645	PF01048	0.284
MOD_GSK3_1	13	20	PF00069	0.669
MOD_GSK3_1	200	207	PF00069	0.437
MOD_GSK3_1	214	221	PF00069	0.560
MOD_GSK3_1	237	244	PF00069	0.554
MOD_GSK3_1	290	297	PF00069	0.621
MOD_GSK3_1	454	461	PF00069	0.298
MOD_GSK3_1	49	56	PF00069	0.618
MOD_GSK3_1	502	509	PF00069	0.313
MOD_GSK3_1	521	528	PF00069	0.176
MOD_GSK3_1	552	559	PF00069	0.413
MOD_GSK3_1	587	594	PF00069	0.591
MOD_GSK3_1	626	633	PF00069	0.284
MOD_GSK3_1	640	647	PF00069	0.284
MOD_GSK3_1	77	84	PF00069	0.721
MOD_GSK3_1	93	100	PF00069	0.585
MOD_N-GLC_1	17	22	PF02516	0.747
MOD_N-GLC_1	263	268	PF02516	0.354
MOD_N-GLC_1	395	400	PF02516	0.634
MOD_N-GLC_1	436	441	PF02516	0.700
MOD_NEK2_1	200	205	PF00069	0.625
MOD_NEK2_1	3	8	PF00069	0.722
MOD_NEK2_1	326	331	PF00069	0.449
MOD_NEK2_1	350	355	PF00069	0.397
MOD_NEK2_1	374	379	PF00069	0.565
MOD_NEK2_1	508	513	PF00069	0.400
MOD_NEK2_1	562	567	PF00069	0.360
MOD_NEK2_2	185	190	PF00069	0.428
MOD_NEK2_2	363	368	PF00069	0.360
MOD_NEK2_2	644	649	PF00069	0.409
MOD_NEK2_2	78	83	PF00069	0.607
MOD_PIKK_1	374	380	PF00454	0.485
MOD_PIKK_1	689	695	PF00454	0.455
MOD_PIKK_1	729	735	PF00454	0.393
MOD_PK_1	419	425	PF00069	0.635
MOD_PKA_1	158	164	PF00069	0.520
MOD_PKA_1	246	252	PF00069	0.467
MOD_PKA_1	430	436	PF00069	0.659
MOD_PKA_1	756	762	PF00069	0.346
MOD_PKA_2	132	138	PF00069	0.552
MOD_PKA_2	158	164	PF00069	0.435
MOD_PKA_2	185	191	PF00069	0.530
MOD_PKA_2	336	342	PF00069	0.550
MOD_PKA_2	451	457	PF00069	0.433
MOD_PKA_2	485	491	PF00069	0.375
MOD_PKA_2	562	568	PF00069	0.421
MOD_PKA_2	582	588	PF00069	0.203
MOD_PKA_2	712	718	PF00069	0.426
MOD_PKA_2	756	762	PF00069	0.355
MOD_Plk_1	316	322	PF00069	0.490
MOD_Plk_4	167	173	PF00069	0.422
MOD_Plk_4	419	425	PF00069	0.583
MOD_Plk_4	485	491	PF00069	0.314
MOD_Plk_4	497	503	PF00069	0.243
MOD_Plk_4	587	593	PF00069	0.438
MOD_Plk_4	682	688	PF00069	0.485
MOD_Plk_4	712	718	PF00069	0.400
MOD_Plk_4	766	772	PF00069	0.331
MOD_ProDKin_1	204	210	PF00069	0.556
MOD_ProDKin_1	294	300	PF00069	0.673
MOD_ProDKin_1	41	47	PF00069	0.676
MOD_ProDKin_1	516	522	PF00069	0.302
MOD_SUMO_for_1	102	105	PF00179	0.445
MOD_SUMO_for_1	71	74	PF00179	0.673
MOD_SUMO_for_1	82	85	PF00179	0.698
MOD_SUMO_rev_2	397	404	PF00179	0.542
MOD_SUMO_rev_2	454	464	PF00179	0.405
MOD_SUMO_rev_2	465	469	PF00179	0.392
TRG_DiLeu_BaEn_1	150	155	PF01217	0.419
TRG_DiLeu_BaEn_1	657	662	PF01217	0.503
TRG_DiLeu_BaEn_1	790	795	PF01217	0.484
TRG_DiLeu_BaEn_2	484	490	PF01217	0.400
TRG_DiLeu_BaLyEn_6	179	184	PF01217	0.460
TRG_DiLeu_BaLyEn_6	814	819	PF01217	0.425
TRG_ENDOCYTIC_2	145	148	PF00928	0.436
TRG_ENDOCYTIC_2	224	227	PF00928	0.428
TRG_ENDOCYTIC_2	351	354	PF00928	0.308
TRG_ENDOCYTIC_2	669	672	PF00928	0.400
TRG_ENDOCYTIC_2	717	720	PF00928	0.284
TRG_ER_diArg_1	138	141	PF00400	0.563
TRG_ER_diArg_1	179	182	PF00400	0.418
TRG_ER_diArg_1	415	417	PF00400	0.719
TRG_ER_diArg_1	450	453	PF00400	0.478
TRG_ER_diArg_1	534	536	PF00400	0.400
TRG_ER_diArg_1	648	651	PF00400	0.357
TRG_ER_diArg_1	741	743	PF00400	0.284
TRG_ER_diArg_1	756	758	PF00400	0.284
TRG_ER_diArg_1	803	806	PF00400	0.425
TRG_NES_CRM1_1	735	746	PF08389	0.400
TRG_NLS_MonoExtC_3	208	214	PF00514	0.695
TRG_NLS_MonoExtC_3	448	453	PF00514	0.379
TRG_NLS_MonoExtC_3	801	806	PF00514	0.380
TRG_NLS_MonoExtN_4	206	213	PF00514	0.642
TRG_NLS_MonoExtN_4	446	453	PF00514	0.400
TRG_Pf-PMV_PEXEL_1	118	122	PF00026	0.673
TRG_Pf-PMV_PEXEL_1	182	187	PF00026	0.377
TRG_Pf-PMV_PEXEL_1	556	560	PF00026	0.465
TRG_Pf-PMV_PEXEL_1	659	664	PF00026	0.455

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N0P4G5	Leptomonas seymouri	65%	95%
A0A1X0P5A4	Trypanosomatidae	40%	100%
A0A3R7KHS6	Trypanosoma rangeli	42%	100%
A4HN12	Leishmania braziliensis	81%	100%
A4IBN5	Leishmania infantum	99%	100%
C9ZYZ6	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	41%	100%
E9AFG9	Leishmania major	93%	100%
E9B6M4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	92%	100%