Mitochondrial DNA ligase-like, putative

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

DNA ligase, putative

Species:

Leishmania donovani

UniProt:

A0A3Q8IDN6_LEIDO

TriTrypDb:

LdBPK_261330.1 , LdCL_260018900 , LDHU3_26.1640

Length:

433

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 0

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 0

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	no	yes: 0

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	no	yes: 0, no: 21
NetGPI	no	yes: 0, no: 21

Cellular components
Term	Name	Level	Count
GO:0005737	cytoplasm	2	1
GO:0110165	cellular anatomical entity	1	1

Expansion

Sequence features

A0A3Q8IDN6

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IDN6

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	22
GO:0006259	DNA metabolic process	4	22
GO:0006281	DNA repair	5	22
GO:0006310	DNA recombination	5	22
GO:0006725	cellular aromatic compound metabolic process	3	22
GO:0006807	nitrogen compound metabolic process	2	22
GO:0006950	response to stress	2	22
GO:0006974	DNA damage response	4	22
GO:0008152	metabolic process	1	22
GO:0009987	cellular process	1	22
GO:0033554	cellular response to stress	3	22
GO:0034641	cellular nitrogen compound metabolic process	3	22
GO:0043170	macromolecule metabolic process	3	22
GO:0044237	cellular metabolic process	2	22
GO:0044238	primary metabolic process	2	22
GO:0044260	obsolete cellular macromolecule metabolic process	3	22
GO:0046483	heterocycle metabolic process	3	22
GO:0050896	response to stimulus	1	22
GO:0051716	cellular response to stimulus	2	22
GO:0071704	organic substance metabolic process	2	22
GO:0090304	nucleic acid metabolic process	4	22
GO:1901360	organic cyclic compound metabolic process	3	22

Molecular functions
Term	Name	Level	Count
GO:0000166	nucleotide binding	3	22
GO:0003824	catalytic activity	1	22
GO:0003909	DNA ligase activity	4	22
GO:0003910	DNA ligase (ATP) activity	5	22
GO:0005488	binding	1	22
GO:0005524	ATP binding	5	22
GO:0016874	ligase activity	2	22
GO:0016886	ligase activity, forming phosphoric ester bonds	3	22
GO:0017076	purine nucleotide binding	4	22
GO:0030554	adenyl nucleotide binding	5	22
GO:0032553	ribonucleotide binding	3	22
GO:0032555	purine ribonucleotide binding	4	22
GO:0032559	adenyl ribonucleotide binding	5	22
GO:0035639	purine ribonucleoside triphosphate binding	4	22
GO:0036094	small molecule binding	2	22
GO:0043167	ion binding	2	22
GO:0043168	anion binding	3	22
GO:0097159	organic cyclic compound binding	2	22
GO:0097367	carbohydrate derivative binding	2	22
GO:0140097	catalytic activity, acting on DNA	3	22
GO:0140640	catalytic activity, acting on a nucleic acid	2	22
GO:1901265	nucleoside phosphate binding	3	22
GO:1901363	heterocyclic compound binding	2	22

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_C14_Caspase3-7	369	373	PF00656	0.428
CLV_NRD_NRD_1	200	202	PF00675	0.269
CLV_NRD_NRD_1	265	267	PF00675	0.292
CLV_NRD_NRD_1	394	396	PF00675	0.335
CLV_PCSK_KEX2_1	200	202	PF00082	0.279
CLV_PCSK_KEX2_1	255	257	PF00082	0.312
CLV_PCSK_KEX2_1	331	333	PF00082	0.284
CLV_PCSK_KEX2_1	394	396	PF00082	0.304
CLV_PCSK_KEX2_1	429	431	PF00082	0.430
CLV_PCSK_PC1ET2_1	255	257	PF00082	0.321
CLV_PCSK_PC1ET2_1	331	333	PF00082	0.291
CLV_PCSK_PC1ET2_1	429	431	PF00082	0.415
CLV_PCSK_SKI1_1	124	128	PF00082	0.351
CLV_PCSK_SKI1_1	241	245	PF00082	0.296
CLV_PCSK_SKI1_1	360	364	PF00082	0.393
CLV_PCSK_SKI1_1	400	404	PF00082	0.335
CLV_PCSK_SKI1_1	81	85	PF00082	0.385
DEG_Nend_UBRbox_3	1	3	PF02207	0.457
DEG_SIAH_1	293	301	PF03145	0.384
DOC_CKS1_1	1	6	PF01111	0.307
DOC_CKS1_1	376	381	PF01111	0.256
DOC_MAPK_gen_1	48	55	PF00069	0.645
DOC_PP1_RVXF_1	145	152	PF00149	0.388
DOC_PP1_RVXF_1	346	353	PF00149	0.391
DOC_PP1_RVXF_1	79	86	PF00149	0.533
DOC_PP2B_LxvP_1	185	188	PF13499	0.307
DOC_PP4_FxxP_1	376	379	PF00568	0.421
DOC_PP4_FxxP_1	85	88	PF00568	0.524
DOC_USP7_MATH_1	380	384	PF00917	0.455
DOC_USP7_UBL2_3	205	209	PF12436	0.218
DOC_USP7_UBL2_3	381	385	PF12436	0.421
DOC_WW_Pin1_4	127	132	PF00397	0.308
DOC_WW_Pin1_4	375	380	PF00397	0.340
DOC_WW_Pin1_4	42	47	PF00397	0.585
DOC_WW_Pin1_4	5	10	PF00397	0.328
LIG_14-3-3_CanoR_1	18	26	PF00244	0.307
LIG_14-3-3_CanoR_1	271	277	PF00244	0.468
LIG_Actin_WH2_2	132	149	PF00022	0.226
LIG_BRCT_BRCA1_1	234	238	PF00533	0.373
LIG_BRCT_BRCA1_1	311	315	PF00533	0.351
LIG_BRCT_BRCA1_1	81	85	PF00533	0.522
LIG_FHA_1	176	182	PF00498	0.373
LIG_FHA_2	118	124	PF00498	0.272
LIG_FHA_2	367	373	PF00498	0.413
LIG_LIR_Apic_2	82	88	PF02991	0.514
LIG_LIR_Gen_1	189	199	PF02991	0.351
LIG_LIR_Gen_1	239	250	PF02991	0.317
LIG_LIR_Gen_1	25	34	PF02991	0.272
LIG_LIR_Gen_1	403	414	PF02991	0.327
LIG_LIR_Nem_3	189	195	PF02991	0.332
LIG_LIR_Nem_3	219	223	PF02991	0.269
LIG_LIR_Nem_3	239	245	PF02991	0.318
LIG_LIR_Nem_3	25	29	PF02991	0.272
LIG_LIR_Nem_3	312	318	PF02991	0.274
LIG_LIR_Nem_3	333	337	PF02991	0.333
LIG_LIR_Nem_3	344	350	PF02991	0.382
LIG_LIR_Nem_3	403	409	PF02991	0.330
LIG_LIR_Nem_3	78	83	PF02991	0.402
LIG_MYND_1	167	171	PF01753	0.307
LIG_PCNA_PIPBox_1	214	223	PF02747	0.307
LIG_PCNA_yPIPBox_3	209	221	PF02747	0.318
LIG_PDZ_Class_3	428	433	PF00595	0.502
LIG_PDZ_Wminus1_1	431	433	PF00595	0.478
LIG_REV1ctd_RIR_1	149	158	PF16727	0.324
LIG_SH2_CRK	242	246	PF00017	0.291
LIG_SH2_CRK	291	295	PF00017	0.369
LIG_SH2_CRK	80	84	PF00017	0.402
LIG_SH2_SRC	327	330	PF00017	0.267
LIG_SH2_STAP1	227	231	PF00017	0.335
LIG_SH2_STAT3	227	230	PF00017	0.428
LIG_SH2_STAT5	220	223	PF00017	0.307
LIG_SH2_STAT5	260	263	PF00017	0.418
LIG_SH2_STAT5	397	400	PF00017	0.336
LIG_SH2_STAT5	401	404	PF00017	0.316
LIG_SH2_STAT5	69	72	PF00017	0.575
LIG_SH3_3	231	237	PF00018	0.296
LIG_SH3_3	320	326	PF00018	0.307
LIG_SH3_3	412	418	PF00018	0.296
LIG_SH3_3	67	73	PF00018	0.557
LIG_SUMO_SIM_par_1	176	182	PF11976	0.350
LIG_TYR_ITIM	404	409	PF00017	0.313
LIG_UBA3_1	169	175	PF00899	0.428
LIG_UBA3_1	319	324	PF00899	0.272
MOD_CDC14_SPxK_1	45	48	PF00782	0.377
MOD_CDK_SPK_2	127	132	PF00069	0.296
MOD_CDK_SPxK_1	375	381	PF00069	0.323
MOD_CDK_SPxK_1	42	48	PF00069	0.370
MOD_CDK_SPxxK_3	42	49	PF00069	0.375
MOD_CK1_1	115	121	PF00069	0.150
MOD_CK1_1	232	238	PF00069	0.338
MOD_CK1_1	5	11	PF00069	0.373
MOD_CK2_1	111	117	PF00069	0.395
MOD_CK2_1	298	304	PF00069	0.334
MOD_Cter_Amidation	329	332	PF01082	0.291
MOD_GlcNHglycan	114	117	PF01048	0.269
MOD_GlcNHglycan	227	230	PF01048	0.338
MOD_GlcNHglycan	234	237	PF01048	0.376
MOD_GlcNHglycan	360	363	PF01048	0.410
MOD_GSK3_1	111	118	PF00069	0.413
MOD_GSK3_1	225	232	PF00069	0.291
MOD_GSK3_1	75	82	PF00069	0.545
MOD_N-GLC_1	5	10	PF02516	0.384
MOD_N-GLC_1	51	56	PF02516	0.584
MOD_NEK2_1	110	115	PF00069	0.233
MOD_NEK2_1	366	371	PF00069	0.447
MOD_NEK2_1	75	80	PF00069	0.478
MOD_NEK2_2	380	385	PF00069	0.475
MOD_PIKK_1	309	315	PF00454	0.326
MOD_PIKK_1	408	414	PF00454	0.323
MOD_PKA_1	255	261	PF00069	0.326
MOD_PKA_2	17	23	PF00069	0.298
MOD_PKA_2	255	261	PF00069	0.326
MOD_PKA_2	270	276	PF00069	0.326
MOD_PKA_2	423	429	PF00069	0.506
MOD_Plk_1	51	57	PF00069	0.638
MOD_Plk_4	175	181	PF00069	0.349
MOD_ProDKin_1	127	133	PF00069	0.308
MOD_ProDKin_1	375	381	PF00069	0.340
MOD_ProDKin_1	42	48	PF00069	0.594
MOD_ProDKin_1	5	11	PF00069	0.328
MOD_SUMO_rev_2	206	211	PF00179	0.410
MOD_SUMO_rev_2	344	350	PF00179	0.496
TRG_DiLeu_BaEn_1	240	245	PF01217	0.291
TRG_DiLeu_BaLyEn_6	213	218	PF01217	0.428
TRG_ENDOCYTIC_2	220	223	PF00928	0.296
TRG_ENDOCYTIC_2	242	245	PF00928	0.313
TRG_ENDOCYTIC_2	339	342	PF00928	0.382
TRG_ENDOCYTIC_2	401	404	PF00928	0.307
TRG_ENDOCYTIC_2	406	409	PF00928	0.301
TRG_ENDOCYTIC_2	80	83	PF00928	0.405
TRG_ER_diArg_1	199	201	PF00400	0.291
TRG_NLS_Bipartite_1	255	270	PF00514	0.368

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1PAX3	Leptomonas seymouri	78%	87%
A0A0S4IPC3	Bodo saltans	26%	100%
A0A0S4KIC5	Bodo saltans	33%	76%
A0A0S4KP75	Bodo saltans	35%	95%
A0A1X0NS61	Trypanosomatidae	33%	83%
A0A1X0NSF5	Trypanosomatidae	60%	83%
A0A3Q8IDV4	Leishmania donovani	25%	69%
A0A3S5IR98	Trypanosoma rangeli	35%	89%
A0A422NIS8	Trypanosoma rangeli	56%	100%
A4HEY9	Leishmania braziliensis	27%	100%
A4HEZ0	Leishmania braziliensis	89%	100%
A4I263	Leishmania infantum	26%	100%
A4I264	Leishmania infantum	100%	100%
C9ZRT4	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	55%	85%
C9ZRT5	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	31%	90%
E9AYB3	Leishmania mexicana (strain MHOM/GT/2001/U1103)	30%	69%
E9AYB4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	95%	100%
Q4Q959	Leishmania major	96%	100%
V5AUB9	Trypanosoma cruzi	60%	83%
V5DAB4	Trypanosoma cruzi	35%	89%