3'-nucleotidase/nuclease, putative

Quick info Localization Expansion Sequence features Structure Function Putative motif mimicry Homologs Download

Quick info

Protein:

Gene product:

3'-nucleotidase/nuclease, putative

Species:

Leishmania donovani

UniProt:

A0A3Q8IBF6_LEIDO

TriTrypDb:

LdBPK_120350.1 , LdCL_120009100 , LDHU3_12.0530

Length:

381

Localization

Secreted promastigote


Source	Evidence on protein	Close homologs
Cuervo et al.	no	yes: 0
Hassani et al.	no	yes: 0
Forrest at al. (metacyclic)	no	yes: 0
Forrest at al. (procyclic)	no	yes: 0
Silverman et al.	no	yes: 0
Pissara et al.	no	yes: 15

Secreted amastigote


Source	Evidence on protein	Close homologs
Pires et al.	no	yes: 0

Exosome


Source	Evidence on protein	Close homologs
Silverman et al.	no	yes: 7

Glycosome


Source	Evidence on protein	Close homologs
Jamdhade et al.	yes	yes: 7

Predictions


Source	Evidence on protein	Close homologs
DeepLoc
SignalP6	yes	yes: 23, no: 6
NetGPI	no	yes: 0, no: 29

Cellular components
Term	Name	Level	Count
GO:0016020	membrane	2	11
GO:0110165	cellular anatomical entity	1	11
GO:0009986	cell surface	2	1

Expansion

Sequence features

A0A3Q8IBF6

Sequence

MSA

Disorder

Secondary

Topology

Domains

SignalP

GPI

Phosphorylations

ELMs

Structure

Predicted structure by AlphaFold2

Related structures:

AlphaFold database: A0A3Q8IBF6

Function

Biological processes
Term	Name	Level	Count
GO:0006139	nucleobase-containing compound metabolic process	3	30
GO:0006259	DNA metabolic process	4	30
GO:0006308	DNA catabolic process	5	30
GO:0006725	cellular aromatic compound metabolic process	3	30
GO:0006807	nitrogen compound metabolic process	2	30
GO:0008152	metabolic process	1	30
GO:0009056	catabolic process	2	30
GO:0009057	macromolecule catabolic process	4	30
GO:0009987	cellular process	1	30
GO:0019439	aromatic compound catabolic process	4	30
GO:0034641	cellular nitrogen compound metabolic process	3	30
GO:0034655	nucleobase-containing compound catabolic process	4	30
GO:0043170	macromolecule metabolic process	3	30
GO:0044237	cellular metabolic process	2	30
GO:0044238	primary metabolic process	2	30
GO:0044248	cellular catabolic process	3	30
GO:0044260	obsolete cellular macromolecule metabolic process	3	30
GO:0044265	obsolete cellular macromolecule catabolic process	4	30
GO:0044270	cellular nitrogen compound catabolic process	4	30
GO:0046483	heterocycle metabolic process	3	30
GO:0046700	heterocycle catabolic process	4	30
GO:0071704	organic substance metabolic process	2	30
GO:0090304	nucleic acid metabolic process	4	30
GO:1901360	organic cyclic compound metabolic process	3	30
GO:1901361	organic cyclic compound catabolic process	4	30
GO:1901575	organic substance catabolic process	3	30
GO:0006163	purine nucleotide metabolic process	5	1
GO:0006195	purine nucleotide catabolic process	6	1
GO:0006196	AMP catabolic process	7	1
GO:0006753	nucleoside phosphate metabolic process	4	1
GO:0006793	phosphorus metabolic process	3	1
GO:0006796	phosphate-containing compound metabolic process	4	1
GO:0009117	nucleotide metabolic process	5	1
GO:0009123	nucleoside monophosphate metabolic process	5	1
GO:0009125	nucleoside monophosphate catabolic process	6	1
GO:0009126	purine nucleoside monophosphate metabolic process	6	1
GO:0009128	purine nucleoside monophosphate catabolic process	7	1
GO:0009150	purine ribonucleotide metabolic process	6	1
GO:0009154	purine ribonucleotide catabolic process	6	1
GO:0009158	ribonucleoside monophosphate catabolic process	7	1
GO:0009161	ribonucleoside monophosphate metabolic process	6	1
GO:0009166	nucleotide catabolic process	6	1
GO:0009167	purine ribonucleoside monophosphate metabolic process	7	1
GO:0009169	purine ribonucleoside monophosphate catabolic process	8	1
GO:0009259	ribonucleotide metabolic process	5	1
GO:0009261	ribonucleotide catabolic process	5	1
GO:0019637	organophosphate metabolic process	3	1
GO:0019693	ribose phosphate metabolic process	4	1
GO:0044281	small molecule metabolic process	2	1
GO:0046033	AMP metabolic process	7	1
GO:0046434	organophosphate catabolic process	4	1
GO:0055086	nucleobase-containing small molecule metabolic process	3	1
GO:0072521	purine-containing compound metabolic process	4	1
GO:0072523	purine-containing compound catabolic process	5	1
GO:1901135	carbohydrate derivative metabolic process	3	1
GO:1901136	carbohydrate derivative catabolic process	4	1
GO:1901292	nucleoside phosphate catabolic process	5	1
GO:1901564	organonitrogen compound metabolic process	3	1
GO:1901565	organonitrogen compound catabolic process	4	1

Molecular functions
Term	Name	Level	Count
GO:0003676	nucleic acid binding	3	30
GO:0003824	catalytic activity	1	30
GO:0004518	nuclease activity	4	30
GO:0004519	endonuclease activity	5	30
GO:0005488	binding	1	30
GO:0016787	hydrolase activity	2	30
GO:0016788	hydrolase activity, acting on ester bonds	3	30
GO:0043167	ion binding	2	30
GO:0043169	cation binding	3	30
GO:0046872	metal ion binding	4	30
GO:0097159	organic cyclic compound binding	2	30
GO:1901363	heterocyclic compound binding	2	30
GO:0008252	nucleotidase activity	6	1
GO:0008254	3'-nucleotidase activity	7	1
GO:0016791	phosphatase activity	5	1
GO:0042578	phosphoric ester hydrolase activity	4	1

Putative motif mimicry


Leishmania	From	To	Domain/Motif	Score
CLV_NRD_NRD_1	363	365	PF00675	0.289
CLV_NRD_NRD_1	42	44	PF00675	0.430
CLV_PCSK_KEX2_1	363	365	PF00082	0.333
CLV_PCSK_KEX2_1	42	44	PF00082	0.433
CLV_PCSK_SKI1_1	262	266	PF00082	0.475
CLV_PCSK_SKI1_1	287	291	PF00082	0.429
CLV_PCSK_SKI1_1	43	47	PF00082	0.537
DOC_MAPK_DCC_7	106	114	PF00069	0.217
DOC_PP2B_LxvP_1	22	25	PF13499	0.399
DOC_USP7_MATH_1	132	136	PF00917	0.369
DOC_USP7_MATH_1	155	159	PF00917	0.301
DOC_USP7_MATH_1	184	188	PF00917	0.290
DOC_USP7_MATH_1	244	248	PF00917	0.230
DOC_USP7_MATH_1	297	301	PF00917	0.354
DOC_USP7_MATH_1	373	377	PF00917	0.526
DOC_USP7_UBL2_3	270	274	PF12436	0.265
DOC_WW_Pin1_4	127	132	PF00397	0.235
DOC_WW_Pin1_4	160	165	PF00397	0.234
LIG_14-3-3_CanoR_1	280	284	PF00244	0.269
LIG_Actin_WH2_2	46	63	PF00022	0.176
LIG_BIR_II_1	1	5	PF00653	0.512
LIG_BRCT_BRCA1_1	226	230	PF00533	0.182
LIG_EH1_1	344	352	PF00400	0.241
LIG_FHA_1	132	138	PF00498	0.310
LIG_FHA_1	351	357	PF00498	0.296
LIG_FHA_1	68	74	PF00498	0.312
LIG_GBD_Chelix_1	12	20	PF00786	0.493
LIG_GBD_Chelix_1	288	296	PF00786	0.474
LIG_LIR_Gen_1	212	221	PF02991	0.273
LIG_LIR_Gen_1	91	100	PF02991	0.286
LIG_LIR_Nem_3	212	217	PF02991	0.273
LIG_LIR_Nem_3	322	327	PF02991	0.402
LIG_LIR_Nem_3	91	96	PF02991	0.294
LIG_LYPXL_S_1	255	259	PF13949	0.501
LIG_LYPXL_yS_3	256	259	PF13949	0.284
LIG_Pex14_2	341	345	PF04695	0.475
LIG_SH2_STAP1	248	252	PF00017	0.236
LIG_SH2_STAT3	100	103	PF00017	0.296
LIG_SH2_STAT5	88	91	PF00017	0.233
LIG_SH3_3	161	167	PF00018	0.212
LIG_SH3_4	46	53	PF00018	0.182
LIG_Sin3_3	352	359	PF02671	0.169
LIG_SUMO_SIM_par_1	176	183	PF11976	0.232
LIG_SUMO_SIM_par_1	20	26	PF11976	0.530
LIG_Vh1_VBS_1	4	22	PF01044	0.331
LIG_WRC_WIRS_1	342	347	PF05994	0.211
MOD_CK1_1	126	132	PF00069	0.296
MOD_CK1_1	183	189	PF00069	0.390
MOD_CK1_1	260	266	PF00069	0.311
MOD_CK1_1	300	306	PF00069	0.343
MOD_CK2_1	193	199	PF00069	0.340
MOD_CK2_1	226	232	PF00069	0.306
MOD_CK2_1	327	333	PF00069	0.419
MOD_CK2_1	364	370	PF00069	0.512
MOD_GlcNHglycan	125	128	PF01048	0.512
MOD_GlcNHglycan	157	160	PF01048	0.487
MOD_GlcNHglycan	182	185	PF01048	0.375
MOD_GlcNHglycan	216	220	PF01048	0.535
MOD_GlcNHglycan	329	332	PF01048	0.572
MOD_GlcNHglycan	333	336	PF01048	0.541
MOD_GlcNHglycan	375	378	PF01048	0.324
MOD_GlcNHglycan	6	9	PF01048	0.634
MOD_GSK3_1	123	130	PF00069	0.264
MOD_GSK3_1	132	139	PF00069	0.317
MOD_GSK3_1	180	187	PF00069	0.273
MOD_GSK3_1	224	231	PF00069	0.247
MOD_GSK3_1	287	294	PF00069	0.264
MOD_GSK3_1	327	334	PF00069	0.445
MOD_N-GLC_1	180	185	PF02516	0.442
MOD_N-GLC_1	238	243	PF02516	0.435
MOD_N-GLC_1	305	310	PF02516	0.639
MOD_NEK2_1	123	128	PF00069	0.318
MOD_NEK2_1	193	198	PF00069	0.259
MOD_NEK2_1	224	229	PF00069	0.266
MOD_NEK2_1	235	240	PF00069	0.324
MOD_NEK2_1	265	270	PF00069	0.262
MOD_NEK2_1	305	310	PF00069	0.384
MOD_NEK2_1	341	346	PF00069	0.434
MOD_NEK2_1	350	355	PF00069	0.247
MOD_NEK2_1	4	9	PF00069	0.468
MOD_NEK2_1	95	100	PF00069	0.223
MOD_NEK2_2	184	189	PF00069	0.376
MOD_PIKK_1	23	29	PF00454	0.508
MOD_PKA_1	363	369	PF00069	0.499
MOD_PKA_2	279	285	PF00069	0.290
MOD_PKA_2	363	369	PF00069	0.502
MOD_Plk_1	215	221	PF00069	0.260
MOD_Plk_1	238	244	PF00069	0.255
MOD_Plk_1	260	266	PF00069	0.270
MOD_Plk_4	116	122	PF00069	0.241
MOD_Plk_4	238	244	PF00069	0.215
MOD_Plk_4	287	293	PF00069	0.261
MOD_Plk_4	300	306	PF00069	0.326
MOD_Plk_4	95	101	PF00069	0.182
MOD_ProDKin_1	127	133	PF00069	0.235
MOD_ProDKin_1	160	166	PF00069	0.234
MOD_SUMO_rev_2	80	85	PF00179	0.262
TRG_DiLeu_BaEn_2	215	221	PF01217	0.182
TRG_ENDOCYTIC_2	214	217	PF00928	0.259
TRG_ENDOCYTIC_2	256	259	PF00928	0.235
TRG_ENDOCYTIC_2	326	329	PF00928	0.464
TRG_ER_diArg_1	362	364	PF00400	0.495
TRG_Pf-PMV_PEXEL_1	207	212	PF00026	0.487

Homologs


Protein	Taxonomy	Sequence identity	Coverage
A0A0N1I8Q7	Leptomonas seymouri	39%	100%
A0A0S4JAL3	Bodo saltans	42%	100%
A0A0S4JML7	Bodo saltans	29%	100%
A0A1X0P2K7	Trypanosomatidae	50%	100%
A0A3Q8IEW3	Leishmania donovani	39%	100%
A0A3Q8IFH4	Leishmania donovani	46%	100%
A0A3Q8IK90	Leishmania donovani	47%	100%
A0A3S7X3A6	Leishmania donovani	39%	100%
A0A422N7B0	Trypanosoma rangeli	43%	100%
A4H6V5	Leishmania braziliensis	84%	100%
A4HI96	Leishmania braziliensis	37%	100%
A4HJL3	Leishmania braziliensis	47%	100%
A4I5I0	Leishmania infantum	39%	100%
A4I736	Leishmania infantum	45%	100%
C9ZQH5	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	39%	100%
C9ZQH6	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	39%	100%
C9ZQW0	Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)	38%	100%
E9AGC7	Leishmania infantum	100%	100%
E9ANW7	Leishmania mexicana (strain MHOM/GT/2001/U1103)	92%	100%
E9B0S4	Leishmania mexicana (strain MHOM/GT/2001/U1103)	38%	100%
E9B0S5	Leishmania mexicana (strain MHOM/GT/2001/U1103)	38%	100%
E9B231	Leishmania mexicana (strain MHOM/GT/2001/U1103)	45%	100%
F4JJL3	Arabidopsis thaliana	24%	100%
Q4Q630	Leishmania major	45%	100%
Q4Q7F3	Leishmania major	37%	100%
Q4Q7F4	Leishmania major	37%	100%
Q4QGQ3	Leishmania major	95%	100%
Q66VY6	Leishmania major	48%	100%
Q8LDW6	Arabidopsis thaliana	26%	100%
V5B8Z9	Trypanosoma cruzi	44%	98%